DreINT0057989 @ danRer10
Intron Retention
Gene
ENSDARG00000100115 | dnah1
Description
dynein, axonemal, heavy chain 1 [Source:ZFIN;Acc:ZDB-GENE-081015-3]
Coordinates
chr11:34417628-34418074:-
Coord C1 exon
chr11:34417796-34418074
Coord A exon
chr11:34417733-34417795
Coord C2 exon
chr11:34417628-34417732
Length
63 bp
Sequences
Splice sites
5' ss Seq
TATGTAAGT
5' ss Score
6.69
3' ss Seq
TTGCCTTTTGTGTATTTCAGATC
3' ss Score
12.28
Exon sequences
Seq C1 exon
GGCAAGAAGCCTCATTCCCAGGAGAAACTATCTCGGTTGCAGGAGCTGATTGAGCCCTGGTTTATCTTTGCACTCATATGGAGTGTTGGAGCTACAGGAGATGCCAACAGCTGCCAGCGTTTCAGTGTCTGGCTCAGGGGCAAGATGGTCGAAGAAAAGGTCAATACCACCATGAATTTTTCAGATGATTTAGTGCTACCAGCAATGATTTACATGCTGCAGACAATGAAAGAGAAGTGCCAGAAAGTGTTTGTTTCATTATTTTTCTTATGTTTTTAT
Seq A exon
GTAAGTAGTTGTTTATTCAGAGTGAGAAGCGGCCTACTGAATTTTGCCTTTTGTGTATTTCAG
Seq C2 exon
ATCCAACTGTGCTTCCCTGAGGAGGGAGCAGTTTATGATTACAATTTAGATGATGCAGGAATAAGTTGTTTTGATGATGAGGACGGAGAGGGTAAAGAGAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100115:ENSDART00000161471:34
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGAAGTGCCAGAAAGTGTTTGT
R:
ACCCTCTCCGTCCTCATCATC
Band lengths:
142-205
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]