BtaINT0050119 @ bosTau6
Intron Retention
Gene
ENSBTAG00000047794 | DNAH1
Description
dynein, axonemal, heavy chain 1 [Source:HGNC Symbol;Acc:HGNC:2940]
Coordinates
chr22:49062857-49063802:-
Coord C1 exon
chr22:49063629-49063802
Coord A exon
chr22:49062896-49063628
Coord C2 exon
chr22:49062857-49062895
Length
733 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
3' ss Seq
TCTCTCCCTCAACCCTCTAGATG
3' ss Score
8.68
Exon sequences
Seq C1 exon
GAGCCTTCAAGCAGCTGGTGGACATCAACTTTGTCTGTGCCATGGGCCCCCCTGGTGGAGGCAGAAATGCCATCACCCCACGGTTGACCCGCCACTTCAACTACCTGTCCTTTGCTGAGATGGATGAGGTCAGCAAGAAGCGCATCTTCTCCACCATCCTGGGCAGTTGGGTGG
Seq A exon
GTAAGTACCAGGCAGGAGTGGGGGAGGCTGTGGGCTCCAGCAGAAGCCCAGGTCCAATGAGCCACGCTGGGAAGAGCGGGGTGGCTGAACCACTGGCTCCACCCTTTACTCAGCTCTGTTATCTTGGGCCAGTTCATGAACCTCTCTGGGCCAGAGTTTCTTCATCTAAAATGGGTGACAATATTAGTGCCCATCACCCCAAGTTGTGAAGGTTAAATAAGACACTGCATGTAGAGCATCTGGTATGAAGCTGGCACATGGAAACTGCTGAATATGTGATTTATACATATGCAAACATGTACGTTCACCCATATAAGCACACACACATATTTTAGAATCTCTGGTGGAGAGATGTTATTGATACTTTTGAACATGAGGAAATACCACCAAGATAGAGTGAACAAAGTGGTCCTCATCTTCCATGAGGCTTGAAGAAAGGTCCGCCCCAGGATGCAGTTTCCCCAACCAGTCCACTTCCTACCAAGAACACACTCTGACCTTTGAACTCCACTTGGCACTGTGCCAGGTGGTGGGTGAGGGGAGTCAGGCTTTCCCTCCTCTGGCCTGCCAGAGCTTGCCTCCATGCCCAGCTTAGGGGTGGGGCCGTGTGGCTCTGAGGAGGGGATGGTGGTCAGGGGCTGCTCTGGGGCTGCTCAGCTGGGAATAGCCGGTCAAGGTGGGCAGCAAGTGGCTCACCTAACTCTGAGCCCTTGTCTCTCCCTCAACCCTCTAG
Seq C2 exon
ATGGACTCCTCGGAGAAAAGAGTTACCGGGAGCCCGTGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000047794:ENSBTAT00000066095:44
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.017 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=FE(20.4=100)
A:
NA
C2:
PF127752=AAA_7=FE(4.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTCAAGCAGCTGGTGGAC
R:
GGGCTCCCGGTAACTCTTTTC
Band lengths:
206-939
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]