DreINT0057994 @ danRer10
Intron Retention
Gene
ENSDARG00000100115 | dnah1
Description
dynein, axonemal, heavy chain 1 [Source:ZFIN;Acc:ZDB-GENE-081015-3]
Coordinates
chr11:34412019-34414647:-
Coord C1 exon
chr11:34414474-34414647
Coord A exon
chr11:34412198-34414473
Coord C2 exon
chr11:34412019-34412197
Length
2276 bp
Sequences
Splice sites
5' ss Seq
TGCGTGAGT
5' ss Score
7.55
3' ss Seq
TTTGTTTCTTTCATTTCTAGAGA
3' ss Score
10.24
Exon sequences
Seq C1 exon
GTACATTTAAAAACCTTGTTGACATAAACTTCGCCTGTGCGATGGGCCCCCCCGGCGGAGGAAGGAATCCTATCACTCAACGCTTCACACGCCACTTCAACTTCCTGTCATTCACTGAGATGGAGGACGCCAGCAAGGGGAAGATCTTCTCCACCATCCTGGGCAGCTGGATGC
Seq A exon
GTGAGTGCCAGTAAACATACGGGCATCTAGATATCAGTGGGGGGTTTTAGCAAGTAACACCTGTCAGATGATATTATAGGATTTTAAATGGAAATGTTTTTGATGTCTTTAAATATGTTTTCAAACGCGGAGAGACACAAAAAGAAGATAGATATAAAAATTGTATACACTTTTTTACGAAGCCTGCATGTATAATGCTTTATACAGATATTCATAATGCATTCACAATCACTTAATGACCTTATAACATGTTGTATCATCTGTTTAATATCATAACAACAGTTAAACTATTAGTTAAAGTATGCTTAATGCTTTATAGTACATACCAGTGTTAGATTTAATAAAAATGAATCGCAAATATATTTCTCCTTAGTTTCCTTTTCACGTAGTTTGATTTTCACTGAAGGAAATGTCTTAAAATCATTTCCTGGTGTCTTTTGCACAGTATTATTACTGTCATTACAAATATTCTTGAGAATATAAACACGTTTTATTAACTATAAAATAGCGTTTAAAAAAAAAAGATTTATTTATCATATTTTTATGACAAATGTAAAAGAGAAAATAACAATATAAATAGAAAAAATGTACATAACAGTACAAAATTGATAAAAAAGCAATAAAAGACCACACTAAAACCCACATATTGTACAACAAACAATATATGATGTGCATAAACAGTATATGATGTGCATTAATGTTTACAAATTAAGCATAGAAAAACTACAAAAGCACGCACAACCCTCTTAACTGGGTGCTCAGCCATAAACGCAAAAGGTGTAAATTAAATATTCATCAAAGGCGATATTCATCAGACAGTCAAACAGACAGTTACTTTCAGGACTGTCTCATGAAGAGCCGTGTGGCTCAAAACGTTACATGCTTTGTGTCAGCCTTTTTAATTTAATAAATTTGTATTTTTTGGAGCTTTGGTGTTGCCACCTTTGATGAATGCACTGCAAAAAATTATTTTCTTACTTAGATTTTTTGTCTTGTTTCTAGTCCAAATATCTGCAAATTCTTAAATCAAGAAGCATTTTCTGGACAAGCAAAACATACTGTCTTGTTTTAAGAAATAATATGCCAAAATTAAGTGAGTTTTTCCTCAAATCAAGCAAAATAATCTGCCAATGGAGTAAGCAAAATAATCTTGTTTTTTGATTTGTGATAAGATTATTTTGCTTACCCCATTGGCAGATTATTTTGCTTGATTTGAGGAAAAACTTACTTCATTTTGGCATATTATTTCTTAAAACAAGACAGTATGTTTTGCTTGTCTAGAAAATGCTTCTTGATTTAAGTACTTTTAGATATTTGGACTAAACAAGGGACAAAAAAATGTTGGTAAGAAAAACATTTTTTGCAGTGTGTTTAATTTACAAATTAAGCATAGAAACAGGTCAGTACTGAAAGATTCTTGCTATTTATTCAGTCATTTTCTTTTCGGCTTAGTCCTTTTATTAATCCCAGGTCGCCACCGTGGAATGAACCGCCAACTTATCCAGCACATGTTTTATGCAGCGGATACCCTTCCAGCTGCAACCCATCTCTGGGAAACATCCATACACACTCATACACTATGGACAATTTAGCCTATCCAATTCACCTGTACCACATGTTTTTGGGCTGTGGTAGAAACCGGAGTACCCGGAGGAAACCCACACGAACGCCCGGAGAACATGCAAACTCCACACAGAAACGCCAACTGACCCAGCCGAGGCTCGAACCAGCAACCTTCTTGCTGTTAGGCGACAGCACTACCTACTGCACCACTGCGTCGCCTCTTGCTATTTTATACATAAATAATACCCCAAATGCATTATAAATACACTGTTAATGATTTGTGTAAATTACACAGTATTTAACGGTAATATAAACTGTATTTTACTGTAGGACAGTTATACTGTATATTACTGTATTTTAAACTTGCATTGTGAAAATTACTGTATATTTTACAGTAAAGATATACTGTACAATACAATTCTGTGAATACATATATAGCAAGATAAGTAGTGCTGTAAATGTGAATACAGTATTTTTGCTGTAATTGATTTACAGTAGGTTACTGGCAAACTGCTGCCAGTAAGTTACAGTAGATTCTACAGGAATTTGTTAACAATGTACAGACTTCAAGTTTTAGAGATATTAAAGCACTGAATGCCACATTTATTGATGTATTGCGCAATGACTCAAAGTTTGATGTCAACCTTGAGCTTATTTTGTTGTTTATGTAGCTCTAGCGAAACTCAAGCTCATTTTGTTTCTTTCATTTCTAG
Seq C2 exon
AGAAAACTCCAGAAATGAAGCCGTTCTGCAAGCCACTTGTTGATGCTACTATCAGGGTTTACTCCACTATTACATCCGCTCTCCTACCCACACCTGCCAAATCCCACTATACTTTCAACCTGAGAGATCTCTCCAAAGTCTTCCAGGGCATCCTGATGGCAGAGGCTGGAAAAATAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100115:ENSDART00000161471:39
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.034 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=FE(21.4=100)
A:
NA
C2:
PF127752=AAA_7=FE(22.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]