GgaINT0019489 @ galGal3
Intron Retention
Gene
ENSGALG00000004297 | DNAH1
Description
NA
Coordinates
chr12:2902757-2903322:+
Coord C1 exon
chr12:2902757-2902930
Coord A exon
chr12:2902931-2903283
Coord C2 exon
chr12:2903284-2903322
Length
353 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
3' ss Seq
TTTATGTCTTTGTTTCCCAGCTG
3' ss Score
8.76
Exon sequences
Seq C1 exon
GTACGTTTAAGAAGCTGGTGGATATTAATTTTGTGTGTGCCATGGGACCTCCTGGAGGGGGAAGGAATGCTGTCACTCCACGCTTCACACGTCATTTCAACTACCTGTCCTTCACGGAGATGGATGACAGCAGCAAGAAGACCATCTTCTCCAACATCCTTGGCAGTTGGATGG
Seq A exon
GTAAGTGCAGCAGACAACTGCCTCCTCATATCGCAAGTCAACCCAATGGTAATGGGGGTATTCTTAGTGTTAACAATTTAATATTGGTGCTCTAATGGGAGCGTTAGACAGTGAAACTTGAATTAATCACTTGAAGGTATTCTTGAGAAACTGTTGTTTGAGCAAACAGAACTCATATGCTGTTTAGTCTCTGGGCCAAACTGAAGCCAACTTCAACTTTGGCTCTCACACTTTGATTAAATATCACATAGCCTATGCATTTTAAAGAGCATTTTGTTTGTAATAGATGGTGCAGATATCGTTCATCTCCACAAGCAAAGCAGTAACTCTTGTTTTATGTCTTTGTTTCCCAG
Seq C2 exon
CTGGCCTCCTAGGAGAAAGAAGTTACAGAGATCCAGTGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004297:ENSGALT00000006843:43
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=FE(20.4=100)
A:
NA
C2:
PF127752=AAA_7=FE(4.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGTTTAAGAAGCTGGTGGAT
R:
GCACTGGATCTCTGTAACTTCT
Band lengths:
211-564
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]