BtaINT0050121 @ bosTau6
Intron Retention
Gene
ENSBTAG00000047794 | DNAH1
Description
dynein, axonemal, heavy chain 1 [Source:HGNC Symbol;Acc:HGNC:2940]
Coordinates
chr22:49060098-49061767:-
Coord C1 exon
chr22:49061589-49061767
Coord A exon
chr22:49060329-49061588
Coord C2 exon
chr22:49060098-49060328
Length
1260 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
TGACGCCAGGGTGGCCGCAGGAC
3' ss Score
0.61
Exon sequences
Seq C1 exon
CTGGGGCCCCCAACATCGCCCACTTCACGGATCCCCTCGTGGAAGCCACCATCATGGTGTACTCCACCATCACCTCCCAGCTGCTGCCCACCCCAGCCAAGTCCCACTACACCTTCAACCTGCGGGACCTCTCCAAGGTCTTCCAGGGAATGCTCATGGCCGACCCAGCCAAGGTCGAG
Seq A exon
GTGAGGACTGGTGGGCCCCCTCCCCAAGTGTCCAGTAGCGAGTGCCCACACTGCCCTCATGGTCCTCCCAGGACCCCAGTTTTAGGCCTTCCTGATCAACTCCTCAGCCTTGATCTGGTCAGGCCCTGCGGCTGGGGGCAGAACTTTGCATCGGCAGGTGCCAAGCCCCCAGGAGCTTCATGCAGCTGAGTCCCATCTTGCTGGTGAAATCCATGCCTAGGATAGTGGTTGTGATGGGGCCACACAAAAGCAGGAGCCAGGTCCTGGCAAGGCCTGGTGGGTTCCTGATGGCAGCCCAGGGTATGAGAAAACTGGGGGCAGAGTCCATGGGATGCCTTCTAGGAACCGAAGGTGCCAGGGGGAAGGAGCAGAAGTGCAGCAGGGGGCAGTGTCAAGGGTGCTGGGTGCCTGTGCAGCTCTGTGGCTGCAGCGGGAGAGAGTCCTGGAGGTGATGGGAGCCGGGGGTGGGGAGGGTGCAGATGTGCACTTTGGAATGGTGGATGGATGGGTCAGTGTGTGCGGGCCCGATGTCTAAGGGACAGGGTGAACAGGAAGGAAACTAGCCATAGCCCTCCAAGCTCCAGGCAAAGGGGTCGAGAGAAGAGCCTGGGGGCTTCCTGAGGCTGGTCCCATCACCCGGGGAGAGGCGGGCAAGTCAGCATGGACGTGGCAGCAGGATGTGGACAGTGTCAGAGGGGGCTTGGGGGTCAAGTGAGGGGTTAGATGTGGGGTGTCAGGAAGGTTTAAGGAGTCAGGCATCCCTCCCAGGCTCTGGGTTTGGGGAGCTCTGGGGACTCTGAAAACTGTGCTAAGTCACTTCAGTCATGCCTGACTCTTTGTGACCCCATGGACTATAGCCTGCCAGGCTCTTCTGTCCAAGGGATTCTCCAGGCAAGAATACTGGAGCAGGTTGCCATTTCTTTCTTTCTCTCGGGGATCTTCCTGACCCAAGGATCAAACTTGAGTCTCTATGTCTCCTGTATTGGCAAGCGTGTTCTTTAACACTAGTACCACCTGGGAAGCCTGAGGTGAGGGGGGACCCTGAAGCTAAAGGAGCTGGGTGCCCAGCTGGCACAGCTGGGCCTGAAGCTGGGGGTGGCAGTGGGGAGACCAGGGCAGCAGTGTGTGGACTGCATCCTCCATGGGTCAGCAGACACTCAGGGTCCTGCTGGGTCCCAGTGGGAGAGCCAGGCCCAGGTCAGGGCCCCTGGGGCATTGAGAGGTGGCTGAGGGCGGGCACTGACGCCAGGGTGGCCGCAG
Seq C2 exon
GACAAGGTGCAGCTGCTGCGCCTGTGGTACCACGAGAACTGCCGCGTGTTCCGCGACCGCCTGGTGAACGACGAGGACCGTGGCTGGTTCGACAAGCTCCTGGAGAGCCACATGGATGAGTGGGAGGTGGGCTTTGAAGAGGTCTGCCCCTTCCAGCCCATCCTCTACGGGGACTTCATGTCGCCGGGCTCCGACGTCAAGTCCTACGAGCTCATCACCAATGAGAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000047794:ENSBTAT00000066095:46
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.017 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=FE(20.8=100)
A:
NA
C2:
PF127752=AAA_7=PD(3.9=14.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTACTCCACCATCACCTCCC
R:
TGGTGATGAGCTCGTAGGACT
Band lengths:
342-1602
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]