GgaINT0019491 @ galGal3
Intron Retention
Gene
ENSGALG00000004297 | DNAH1
Description
NA
Coordinates
chr12:2904412-2905400:+
Coord C1 exon
chr12:2904412-2904590
Coord A exon
chr12:2904591-2905169
Coord C2 exon
chr12:2905170-2905400
Length
579 bp
Sequences
Splice sites
5' ss Seq
AAGGTCAGT
5' ss Score
8.68
3' ss Seq
TTGCTGGGGTTTCCTACCAGGAC
3' ss Score
7.9
Exon sequences
Seq C1 exon
CTGGAGCAGTTGCAGTCAAAGACTTGAATGAGCCCTTGGTTGATGCCACTATCTACGTGTATTTGACCATCACATCCCAGCTGTTGCCCACACCAACAAAGTCTCATTACACCTTTAACCTGAGAGACCTCTCCAAGGTGTTCCAGGGCATGCTCATGGCTCAGCCCAGCAACGTCAAG
Seq A exon
GTCAGTCCTGCCACCAGCACAACCATGCCACCCGGGGAAAGACCAGAAATGTTCCAGCTCACACCTCAGTTTATTGTTGAAGTTGTATTTTCACACTGCTAATGAATTTAGTGATCAGCAGGACTCTGAACACCCCACAACCCAAAGGCTTCCTTGTTGTGGGATCATAGAATGGCCTGGGTTGAAAAGGACCACAATGCTCATCCAGTTCCAACCCACTGCTATGTGCAGGGTCTCCAACCACCAGCCTAGGCTGCCCAGAGCCACATCCAGCCTGGCCTTGAATGCCTCCAGGGATGGGGCATCCACAGCCTCCTTGGGCAACGTGGCCACAGAGTCAATGCCATTTGCTCCTGTAGGGCTGGACACACAGCTCTCTGCCAAGCAGCTGTTTTGACAAGAGTTGCTTTTGAGAGAAGGGAATAGAGCTTCCTCCTCCCAGTTCTTTCTCCACTCCAGCTGCTTTGAAGCAGGAGCAGGGCTGGCCACGTGTTTGGTGGAAACCAGCCTTCCTGTGTGAGAGGCTCATAACAAACCTTTGCTTCTCTCATGGGGATGTTTGCTGGGGTTTCCTACCAG
Seq C2 exon
GACAAACACCAGCTGCTGAGACTGTGGTACCACGAGAGCTGCCGGGTCTTCTGTGATCGCCTGGTCACCAAGGAGGACCAGACCTGGTTTGACAACCTGATGAAAAGTATGATGGAGGAACTAGACACCACTTTCGATGAGGTTGTCCCATCCCAGCCGGTTCTGTTTGGGGACTTTATGGAACCAGGGGCACATATCAAACTGTATGAAGAAATCGACAGCCAGGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004297:ENSGALT00000006843:45
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=FE(20.8=100)
A:
NA
C2:
PF127752=AAA_7=PD(3.9=14.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGAGCCCTTGGTTGATGCC
R:
TGATATGTGCCCCTGGTTCCA
Band lengths:
352-931
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]