RnoINT0048601 @ rn6
Intron Retention
Gene
ENSRNOG00000026914 | Dnah1
Description
dynein, axonemal, heavy chain 1 [Source:RGD Symbol;Acc:621795]
Coordinates
chr16:7362460-7363786:-
Coord C1 exon
chr16:7363608-7363786
Coord A exon
chr16:7362691-7363607
Coord C2 exon
chr16:7362460-7362690
Length
917 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
TGACACTGGGTACTCAACAGGAC
3' ss Score
4.92
Exon sequences
Seq C1 exon
CTGGGGCCCCCAACATCGTCCACATGACGGAGCCCCTCGTGAACGCTACCATCAGTATATATGCTATCATTACCTCCCAGCTGCTGCCCACACCAGCCAAGTCCCACTATACCTTTAACCTGAGGGACCTGTCCAAAGTCTTCCAGGGAATTCTCATGGCTGAACCAGCTAAGGTTGAG
Seq A exon
GTGAGTGTCTGCCAGGCCTCCACCCCATGCCCCTGTTGCCCTCGTCGTCGTCCTCTCAAGTTTAAGCCTTCACAAGAGCCTGACCTTCATGCAGCTAAGCCTATCTTGTGAGCCAAACTCATGCCCAAAATCGTGACCATGATGAGGTCATGAAAAGAACAAGCCAGGAGAAGGCAAGGAGGCAGGAGAATGTCTAGTAGAGGCCTTACGTGTGAGAAGACTTGGGTGGAGACAAACAAGGTGTCTTTGGAAGCTAAGTGTGTGGAGATACAAGGAGTGGGCAGTGGGGATGCCCAGGAGCCAGAACGCACAGGCTGTGGGTCTGGCAGAGAGCTCAAATGGGGAGCCACCGGGAACCGCTGGCTAAACAACCAAAGTGTGGCTAGCCTAGGAAGGTGGGGTGGATAAGACAAAGGGCGGTTCTGCCCTTGCTGAGCTCATAGCCAATGAGTTAAAAGAAATGTCTGCGGTCCCCAGCTCCGAAAAAAAGAAAAAGGAAAAAAAAAAAAAAGAAAAGTCTGGAACTTCCTTAGTGTGCCCAAGGACTCTGGTGGAGAGGCATGGAAACTGGACTAGAGTAGACTAGAGTGGGCAGCAGATCTAAACACAGAAGGACTGGTAGAGCTCTCTGAGCAGTCAAATGTGGGGTGTTGGGATATGCACGACCAACTGCTGGTGCTGGTGCATAGTGGGCGCTGGGAGCCGGGGATGGGCAGGCTCAGAGTACGCCGCCATCCTCTTAGTCTTCAGTTGTGCAGAAGGCTGGTCTCCCAGTAGTTTCCTGTATGTGACTCTGAGACAAAGGAGACCAGTCCTGTGGGCCACATTCCTGTCATCCCGGTCTGTCTCCCCCGGAACTTCAAATGATGACGTCAGGCCAGCAACCAAGGCAGGACCTGACACTGGGTACTCAACAG
Seq C2 exon
GACAAGGTGCAGCTGCTGCGGCTGTGGTACCATGAGAACTGCCGTGTGTTCCGTGACCGCCTAGTGAATGAGGAAGATCGCGGCTGGTTTGATGGTCTCCTTGAAATGAAGATGGAGGATTTGGGGGTGGCCTTCAACAAAGTTTGTCCCTTCCAACCCATTCTTTATGGGGACTTCATGTCCCCAGGCTCAGATGTAAAGTCCTACGAGCTCATCACCAGTGAGAATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026914:ENSRNOT00000035009:48
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=FE(20.8=100)
A:
NA
C2:
PF127752=AAA_7=PD(3.9=14.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCGTGAACGCTACCATCAG
R:
TTACATCTGAGCCTGGGGACA
Band lengths:
344-1261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]