BtaINT0050124 @ bosTau6
Intron Retention
Gene
ENSBTAG00000047794 | DNAH1
Description
dynein, axonemal, heavy chain 1 [Source:HGNC Symbol;Acc:HGNC:2940]
Coordinates
chr22:49057578-49058844:-
Coord C1 exon
chr22:49058709-49058844
Coord A exon
chr22:49057787-49058708
Coord C2 exon
chr22:49057578-49057786
Length
922 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCCA
5' ss Score
3.75
3' ss Seq
CTCCACCCTGCTCTCCCCAGATC
3' ss Score
9.81
Exon sequences
Seq C1 exon
GGCCGAGTTCGAGTGCTTCCAGATTGAGCTGTCTAAGAATTACGGCATGACAGAGTGGCGTGATGACGTCAAGAAGGTCTTGCTCAAGGCTGGCTTGCACAACCTGCCCATCACCTTCCTGTTCTCAGATACCCAG
Seq A exon
GTGCCACTACATGGGCAGTGGGCGGGGTCTGGGGTGAGCGGGATACCACTCACCCCAGCATGCCATCCAGAATGGTGGTCAGTCTTTTGAGTCCAGGTCCCTGTTAGTGGGGGTGGATCTTGGGAGGAATGGCTGTAAGAGGGGCAGGGGGTCAAACCCAGCCTGTCAGAACGGGGGGGTGGTGGGCATAGATCATGGTTATCCCCAGAGGTAAAGAAGGCCCCTGGCGCCATGGCTGACCATAGGCAGAACCACACTCACTGGTCAATGGCTTCTGACCTTAAAGACCACAGGACTCCTACAGTGCTGGGCCCACGGCTTCCTTCCTAGGGCTACTCCATCTGGAGCTCCCTAGGTGTGAAGCCTCTTCCAGGGCTGAGAAGAGGAGAGGTTGTGGGTCCGGGACCTCAAGACAGGCAGGGCAGCACTTCAACCTGACTGGCATTTGGGGTTGGGCTGAAACTGAAGCCCCAGAAGGCTCCCAGCCAGCCCTGCTCTTCTATCTGGGGCTCCCCTTATGTAGTCAGGTGAGAGAGGGTGCCTTCTGGCACTGGCCAGGCCCTGGCCATATGAGATAGGCAAGGACCTGTTTCTGCCTGTGGCCTGGTTTTCTCCAGTGGATTAAACTGTGAGATGTGGAGAGGCCCAGCAAGAGAGGAGGAAGACACTGCATGTCGCACCCAGGACCCAGGCCCTTCCATAGCCAAGCACCGATGTTCAGAGTCTCTGCTGCAGGGCGGGTCTGGGTGTGAGTCCTTGACCACGACTTGGGAGGTCACCTGTGTAACCCTGGGCTTCTCTGAGCCTAGAGGCACTGTCTGTGGAAGGGGTCTGCTGCTAAGGTTCAAGGAGACCAGGGTCGTGGAGCCCAACACCCCAGGGCCATCATCAAGGTTCATTTCCTCCACCCTGCTCTCCCCAG
Seq C2 exon
ATCAAGAATGAGTCATTCCTGGAGGACATTAACAATGTCCTGAACTCGGGCGACATTCCCAACCTCTACAACATGGATGAGCAAGACCAGATCATGAACACCATGCGGCCGTACATCCAGGAGCAGGGCCTGCAGCCCACCAAGGCCAACCTCATGGCCGCCTACACTGGGCGTGTGCGCAGCAGCATCCACCTGGTGCTGTGCATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000047794:ENSBTAT00000066095:49
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127802=AAA_8=FE(16.6=100)
A:
NA
C2:
PF127802=AAA_8=FE(25.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGTTCGAGTGCTTCCAGAT
R:
CTCATGCACAGCACCAGGT
Band lengths:
342-1264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]