RnoINT0048605 @ rn6
Intron Retention
Gene
ENSRNOG00000026914 | Dnah1
Description
dynein, axonemal, heavy chain 1 [Source:RGD Symbol;Acc:621795]
Coordinates
chr16:7359493-7360670:-
Coord C1 exon
chr16:7360535-7360670
Coord A exon
chr16:7359702-7360534
Coord C2 exon
chr16:7359493-7359701
Length
833 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCAC
5' ss Score
4.29
3' ss Seq
TGCCCCTTGTCCTTCTCCAGATC
3' ss Score
11.2
Exon sequences
Seq C1 exon
GGCGGAATATGAGTGCTTCCAGGTTGAGCTGTCCAAGAACTACGGCATGTCTGAGTGGCGTGAAGATGTCAAGAAGATTCTGCTCAAGGCTGGCATGCAGAACCTGCCCATCACCTTCCTGTTCTCAGACACTCAG
Seq A exon
GTGCACCCACCACAGCAGTGGGCAGGGCTCAGGGTGGGCTCACCACAGAGCACCCCCAAGTAGTATCCCGTAGGGTGCTCAGTCCTATATGCTCAACTCCCTATACATTAGGTGTGGGTGGGGTTATGATTAGACTGGTCAAGAGAGGAACCAAAGCCAGTCTCTCAAGGCTAAGGGGAAGCAGTGATCATTACTCATGCTCCAAGAGTAAAAAGCACCTTGGTGCTATAACACACTACTCATGGCTCAATGGCTTCCTACCTTAAGGACCACAAACGTGTTCCTGAGGAATAGGGAGCCCATAGCTCTGCATTAGGGGGCATAACGTCTCTTTCCAGGTCTCTGAGGAGAGAGGCCACAAGGCAAACAGGACAGTACTTAAACCTGACTGGCAGTACAGGTTGTGTGGGTCAAAGGCTCCAAGATCATGCCCCGACCCTAGACAAGGTCCCTTCCCTCTTAGATCTGTCCAGCCCTTTCATATAGTCAAGAAAGTGAGGTTTCCCTCAACACAGGCCAGATGGCTCTGTCGGTGGCCATGGTTTCTTCCTTAAGTAAAATAAGGCCTTGAAGAAAAGCTAGAAAAGGATCAGGAAGACTCCACCCCATCCCACCCCTGACTCTGGGCCCTGCCACAGCCCCGCAGGTTATACTCCCAGCCTCCACTATGGGGCAGATCTGAGTGGAAGGCCAGGACCTATGATGAAGTCAATGGCGTGACCTTGGCCTAGTTTCTATATGGGGCTGTTACAAAGGTCAGGCAAAATCATTCATGGGATGCGACTGTGGGGGTGTCCATAAAAGCTTAGCTCCTGCCCCTTGTCCTTCTCCAG
Seq C2 exon
ATCAAGAACGAGTCCTTCTTGGAGGACATTAACAACATCCTGAACTCAGGTGACATCCCCAACCTCTACAGTGCAGATGAGCAAGACCAGATCGTCAACACCATGCGGCCCTACATACAGGAGCAGGGCCTGCAGCCGACCAAAGCCAATCTCATGGCCGCCTATACCGGGCGTGTGCGTAACAACATCCACATGGTGCTGTGCATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026914:ENSRNOT00000035009:51
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127802=AAA_8=FE(16.6=100)
A:
NA
C2:
PF127802=AAA_8=FE(25.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCGGAATATGAGTGCTTCCA
R:
ATGCACAGCACCATGTGGATG
Band lengths:
342-1175
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]