GgaINT0019494 @ galGal3
Intron Retention
Gene
ENSGALG00000004297 | DNAH1
Description
NA
Coordinates
chr12:2907837-2909006:+
Coord C1 exon
chr12:2907837-2907972
Coord A exon
chr12:2907973-2908797
Coord C2 exon
chr12:2908798-2909006
Length
825 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGG
5' ss Score
9.99
3' ss Seq
TCTCCACCTCATCTACTTAGATT
3' ss Score
7.01
Exon sequences
Seq C1 exon
GGCAGAATATGAGTGTTTCCAGATCGAATTGTCCAAGAACTATGGCGTGACCGAATGGCGAGACGATGTGAAGAAGATCATGATGAAGGCAGGCCTTGAAAGCATACCCAAGACATTCCTGTTTGTGGACACACAG
Seq A exon
GTATGGGAGCGTTAGCATGGCTGACTTCTTGTAGGGAGTCAGGATCACATCTTTAAGCTCAAGACTTTTCCCCCAGGAGCTGGATAGAAGATAACATTGGCTTGTTACTGTAAACTGTAGCTGTAGACTAACTCCTGGAATTCGTGCTTGTATTTCCCATGGGCTTTTATACTGCCATCGTTATCATAGGAACCAGGTTGCTCCAAGCAGCGCCCTAAGCAGAGAGATGAGCATCTGTCAAATGCTGCTTGTTCGCTCATCCTTTTCCCTGCAGTGAGAAGCATATGTGGGAGAAAGGCGGGGGCATTGGAGGGTACGTTTAGACAAGTAGATGGATGCTGTGTACTTCTGATGTAGCAAGGGCAGGGAGGTGAGTGCAGCTTTGGAGGGAGATCATCCCACAGACTGTGACATGTCCCTGTGATTACTCTGCCTCTCATATTATCCTAATAGTGAAGTGTTCAGCTGTGATGGAGAAACAAGGACCTGGAGCACCCTGGGGGTGGGGTCTGGTCACAGAGTCACTGCAAGGCATGGAGCAAAACCCTGAGCATAACGTGTCTGTAAGGAGATAGCAAATGAGCAGAAGGAAGGCTTGTTCCCAGGCATCTCCACCTCTGAAGTGGCTGAACGTGGCTGTTCAATTGCAAATGCTGGCCCTGAGACGTGAATATCCCTTACTGGAGCCCAGCAATCAGAGAAACAATTTCTTACAGCAGAGGCTGTGGGCTGTTTTTATCCAGAAGTTCGTTACAGGGCATACAGAGACCTGACTCTCTCATAACTTAAGAAACTGCCTTTTCTCTCTCCACCTCATCTACTTAG
Seq C2 exon
ATTAAAAATGAGTCTTTCCTTGAGGATATCAACAACCTGCTCAACTCCGGTGACGTTCCCAACATTTACAGCGCCGATGATGAGGAGCAGATCATGACAGCCATGAAGCCTGTTGTGCGAGAGCTGGGGCAGCAGCCCACCAAGGCCAACCTGATGGCTGCGTACACAGGACGGGTTCGCAGCAATATCCACATGGTCCTGTGCATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004297:ENSGALT00000006843:48
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.014
Domain overlap (PFAM):
C1:
PF127802=AAA_8=FE(16.6=100)
A:
NA
C2:
PF127802=AAA_8=FE(25.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAGAATATGAGTGTTTCCAGA
R:
CTCATGCACAGGACCATGTGG
Band lengths:
345-1170
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]