BtaINT0050142 @ bosTau6
Intron Retention
Gene
ENSBTAG00000047794 | DNAH1
Description
dynein, axonemal, heavy chain 1 [Source:HGNC Symbol;Acc:HGNC:2940]
Coordinates
chr22:49047089-49047685:-
Coord C1 exon
chr22:49047489-49047685
Coord A exon
chr22:49047234-49047488
Coord C2 exon
chr22:49047089-49047233
Length
255 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGC
5' ss Score
8.69
3' ss Seq
GGATGTGGGCACTGTTGCAGGGA
3' ss Score
2.78
Exon sequences
Seq C1 exon
AACGAGTGGCGCTACCTCCTATCTGGAGGCTCCGTTTCGGTCCTGAGTGAGAACCCTGCCCCAGACTGGCTGACAGACCGGGCCTGGAGAGACATCCAGGCGCTCTCCAACCTACCGGCCTTCTCCTCCTTCACCCATGATTTCGTGAAGCACCTGCCGGAATTCCAGGCCATCTTTGACAGCCATGAGCCCCACCG
Seq A exon
GTGAGCTGGGGCCTGGGGCACAGCAGGGTAGGTGCATCCAGGGAGTGAGACCCAGGTACAGGCTTGCCCTGGACTTTCTCTGAGGGGCCGCCCAGGGCTGCCCCGCAGCTGTGACTACATCTCTCCCGTGCCCGCAGCCACGCACCCCTGGACACCGCATTCTCCGTGCTGTCTGGCCTCCCCCACCAAGCAGAGAGCCTGTGGCCAGTGTCCTACCACAGGTCAGCTCTCAGGGGGATGTGGGCACTGTTGCAG
Seq C2 exon
GGAGCCCTTGCCTGGCATCTGGGACCAATACCTGGACCAGTTCCAGAAGCTGCTGGTCCTCCGCTGCCTACGTGGGGACAAGGTGACCAATGCCATGCAGGACTTTGTGGCCGCCAACCTGGAGCCACGCTTCATTGAGCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000047794:ENSBTAT00000066095:65
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=PU(7.6=81.8)
A:
NA
C2:
PF0302810=Dynein_heavy=FE(6.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGGCGCTACCTCCTATCTG
R:
AAAGTCCTGCATGGCATTGGT
Band lengths:
299-554
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]