RnoINT0048623 @ rn6
Intron Retention
Gene
ENSRNOG00000026914 | Dnah1
Description
dynein, axonemal, heavy chain 1 [Source:RGD Symbol;Acc:621795]
Coordinates
chr16:7350542-7351106:-
Coord C1 exon
chr16:7350910-7351106
Coord A exon
chr16:7350687-7350909
Coord C2 exon
chr16:7350542-7350686
Length
223 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGC
5' ss Score
6.46
3' ss Seq
ATAGGTGGGCTTTATTGCAGGGA
3' ss Score
3.99
Exon sequences
Seq C1 exon
GGTGAGTGGCGCTACCTTTTGTCTGGAGGCTCCATCCAGACCATGTCTGAGAACCCTGCCCCACATTGGCTCTCAGACCGGGCCTGGAGAGACATCTTGGCACTCTCAAACCTGCCAGCCTTTTCTACCTTCTCTACCGACTTCGTGCAGCACCTCCCGAAATTCCAGGCCATCTTTGACAGTGCTGAGCCTCACAG
Seq A exon
GTGTGCTGGCCCCCAGTATGCCCCCAGGGACCCAAGAGAAGACCCCAGAAATAGGCCCACCCAGAGACCTCCTCTGAAAGGCCTGGTCTTGCCATGCCTCTATGGCCACATCTCCCTGTGCTTCTAGCCCTGTTCTCTTGGGAACCCCCATACATCTGACAAAGTTCATGGGCCTGTGGTTTCCTGTAGGCTGGTTCTGAGTGATAGGTGGGCTTTATTGCAG
Seq C2 exon
GGAGCCCTTGCCTGGCATCTGGAACACATACCTGGACGAGTTCCAGAAACTGCTTATTCTCCGTTGCCTGCGTGGGGATAAAGTTACTAATGCCATGCAGGACTTTGTGGCCAACCACCTGGAACCCCGATTCATTGAGCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026914:ENSRNOT00000035009:68
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=PU(7.6=81.8)
A:
NA
C2:
PF0302810=Dynein_heavy=FE(6.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGGCGCTACCTTTTGTCTG
R:
CCACAAAGTCCTGCATGGCAT
Band lengths:
303-526
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]