GgaINT1011468 @ galGal4
Intron Retention
Gene
ENSGALG00000004297 | DNAH1
Description
dynein, axonemal, heavy chain 1 [Source:HGNC Symbol;Acc:HGNC:2940]
Coordinates
chr12:3096870-3097547:+
Coord C1 exon
chr12:3096870-3097066
Coord A exon
chr12:3097067-3097402
Coord C2 exon
chr12:3097403-3097547
Length
336 bp
Sequences
Splice sites
5' ss Seq
CAGGCAAGT
5' ss Score
3.1
3' ss Seq
CCAAAATAACTGCTTTGCAGAGA
3' ss Score
3.67
Exon sequences
Seq C1 exon
GATGAGTGGCGATACCTGCTCTCAGGGGGAGCTGTAAAGGAGGTGCAGGAGAACCCAGCTCCAGACTGGCTCAATGAGCGAGCATGGGGAGACATCCTGGCTTTGAGCAACCTGAAGAACTTCTCTGGCTTTGCCAATGACTTTGTCGCCAACCTTGCAGCATTCAGGGCCATCTTTGACAGCCACAAACCTCACAG
Seq A exon
GCAAGTGTCCCAAGCTCTGTCAGTTTTATTGTGCTGTGCCAGGCACGCGATGGCATCTCTGGAAGAGCATGAGGTGCCGATTCAGCCATAGCACTAGCAATGCTGAGTGCAGTGCTGGCTGGGGTTTGGGCTTCTGGCACTCTTGCTCGCCCAAGGCAGGGCCCAGAAGCAGCTGCTGCTCTGCTTTGCACTCTAATAATCTCAAAGCTATGAACAACAGCCTCAGCCAACTGGCTGGAAGGTCCTTGTCCTTCCTCAGACTCCACAGCCTCCTGTGGAGCATCTCAAGTGCTTCTTAAGGATCTGACCCATTCCCCCAAAATAACTGCTTTGCAG
Seq C2 exon
AGAGACCCTGCCTGGGAAGTGGGATGTTGAGCTTGATGCCTTCCAGAAGCTGCTGGTTCTGCGGTGTCTGCGGGGAGATAAGATCACCAATGCCATGCAGGACTTCGTGGCACTGAACCTGGATCGGCACTTCATTGAGCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004297:ENSGALT00000006843:67
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=PU(33.1=81.8)
A:
NA
C2:
PF0302810=Dynein_heavy=FE(29.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGAGTGGCGATACCTGCTC
R:
CTGAGGCTCAATGAAGTGCC
Band lengths:
342-678
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]