BtaINT0050160 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016523 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr17:54163129-54164535:-
Coord C1 exon
chr17:54164359-54164535
Coord A exon
chr17:54163255-54164358
Coord C2 exon
chr17:54163129-54163254
Length
1104 bp
Sequences
Splice sites
5' ss Seq
GAAGTATGT
5' ss Score
6.97
3' ss Seq
TTGCCTGACTTCTCTGATAGGTC
3' ss Score
9.17
Exon sequences
Seq C1 exon
ATTGACATAGTTAACAAAATCTTTGTCCAGAACCTCGACAACCCCCCGTTGTATAAGAACCATCCCCCGGTGGCAGGTGCAATCTACTGGGAACGGTCCCTGTTCTTCCGGATTAAGCACACCATCCTCAGATTTCAAGAAGTAGAGGAGATCCTGGACAGTGATGGAGGAAGAGAA
Seq A exon
GTATGTTATGTCTGCTGCAACAGGCCTGTTTTGAGTTTTACGTTTTAAAAAATCATTCATTCATTTAGGCTGCTCTGAGTCTTGAGTGAGTGCTGCGCCTGGGCTTTCTCTAGTTGTGGCGAGCGGGGGCTCCTCTCTATTCGTAGTGCATGGATTTATTGCGGTGGTGCCTCTTGTTGTGGAACACGGGCTCCAGGGCACGCAGGCTGCGGCATTCAGGCTCAGTAGTTGTGGCACACGGGCTTAGTTGCCCCCAAGGCATGTGAGATCTTAGTTCCCTGTCCAGGGATCAAACCCATGTGCCCTGCATTGGAAGGTGGATTCTTAACCACTGGACCACCAGGGAAGTCCTGGATTTCACGGTTTAATTGTAGATGGGTAGCCTTGAGCGTGCCCAGGTGGCTCCTTCAATCTAGGTGACCCCTGAGCATGAGCTGGCTATACAGAGTTGCCTGCATGAAAAGCAGCTCAACTTCAAATCCATGCCTGCAACTTAGTCTTTCCTGTGGTCCCTGGGGACCACATCTCCATATGTATGACATAATATATCTATGACAGCTTCCAGGTGACAATCACATGACTTCCTCCTGATCTTGATCTTCAGCCTCTCCAGAGGGTGACCACGCTCTTTTTGATAATACTGTCCCTCCTCTTCATGCATTTTTGTCTGTTACATCATAAGGGCTAGGAAACCTTTTCTTTAACCGTCCAGAGAATAAATATTTTAGGCATTTGTGGGTCAAATGGCCCCTGTTGCAACTATTCAACTCTGCCTTTCTAGAAAGAAAGTGGTAGATAACATGTAAATGAACAGATGTGTTCCAATAAAACTTCATTTATGGATGCTGAAATTTGAATTTCATATGGTCTTCACAAGTCATGAATAACTGTCATTCTTTTTGAGCTCCCAGCCATGGGCTGAGGTTTGTGAGTCCTCCTAATCAGCCTAGAGTTTAAGCCGTACTGTGGCAGGCAAACCATCCAAATTTGTGCAAATCTGCCTGCTTCCTCTTGCATGAAGTGTTAAGTGATTTTTTTTTTCAGGAGAGAGAAAAAATTGTTATTCTCAAGGACAAAGTGATATTTGCCTGACTTCTCTGATAG
Seq C2 exon
GTCAAACAAAAATATTTGGAACTGGGTAGGATGATGAAAGACTATGAAGATAGAAAGTATGAGCAGTGGAGAGAGACGACGGAACAGATCCTGCCAACTCTCATGAAGAAGAGTCTGCTTACTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016523:ENSBTAT00000029664:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(25.7=100)
A:
NA
C2:
PF083857=DHC_N1=FE(18.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAAATCTTTGTCCAGAACCTCGAC
R:
AGTAAGCAGACTCTTCTTCATGAGA
Band lengths:
286-1390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development