GgaINT0008919 @ galGal4
Intron Retention
Gene
ENSGALG00000003170 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr15:4897521-4898166:-
Coord C1 exon
chr15:4897990-4898166
Coord A exon
chr15:4897644-4897989
Coord C2 exon
chr15:4897521-4897643
Length
346 bp
Sequences
Splice sites
5' ss Seq
GAAGTATGT
5' ss Score
6.97
3' ss Seq
TACAAAGTTTTCCTTTCTAGGTC
3' ss Score
10.11
Exon sequences
Seq C1 exon
GTTGAATATGTTAAACAAATCTTTGTTCAAAACCTCATGGATCCACCCTTATTCAAGAATCATCCTCCACTGGCTGGAGCAATATACTGGTCCCGATCACTTTTCTATCGCATCAAACACACTATTGTTCGATTTCAGGAAGTAGAGGGGTTGCTTGCTAGTGAACGTGGAAAAGAA
Seq A exon
GTATGTTGGTTTCTTTGCTGTTTAATGAAGGAAGAAATACTTTCCTCGCACCTTTCTTCTAGGGATGTGAAAATGCTCTTATGTGAATGAAGTCCGAAGAACGTCTTTGCACGTAGTGGTCCATGTTAGTCATGAAAATTTGATTGGAAACCTTTTCACTGTTTCTCAGAGAGAGAGTGACAGAATCAATGACAGAACTCAAAAACCTAAATTCTTCATTGTCTGCATAAATTACAAGGCATTACCTACCCTCTCATTTAATACAGTTTGGAAACAAATCTTATTAAGACAGGATAGTGAATAATTTTTCCTGATCTTTAAGATGATACAAAGTTTTCCTTTCTAG
Seq C2 exon
GTCAAGCAAATATATCTTAAAGTGGCCAAGAGGATGAAAGAATATGAAGATCAGAAATATGATCAGTGGAGACATGAGACAGAAAAGATGCTCCCACTGTTATTGGAAAAAACTCTGCTGATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003170:ENSGALT00000005023:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=PD(0.1=0.0),PF083857=DHC_N1=FE(25.4=100)
A:
NA
C2:
PF083857=DHC_N1=FE(21.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTTTGTTCAAAACCTCATGGATCC
R:
TTTTTCCAATAACAGTGGGAGCA
Band lengths:
270-616
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]