GgaINT0008919 @ galGal3
Intron Retention
Gene
ENSGALG00000003170 | DNAH10
Description
NA
Coordinates
chr15:4944156-4944828:-
Coord C1 exon
chr15:4944652-4944828
Coord A exon
chr15:4944306-4944651
Coord C2 exon
chr15:4944156-4944305
Length
346 bp
Sequences
Splice sites
5' ss Seq
GAAGTATGT
5' ss Score
6.97
3' ss Seq
TACAAAGTTTTCCTTTCTAGGTC
3' ss Score
10.11
Exon sequences
Seq C1 exon
GTTGAATATGTTAAACAAATCTTTGTTCAAAACCTCATGGATCCACCCTTATTCAAGAATCATCCTCCACTGGCTGGAGCAATATACTGGTCCCGATCACTTTTCTATCGCATCAAACACACTATTGTTCGATTTCAGGAAGTAGAGGGGTTGCTTGCTAGTGAACGTGGAAAAGAA
Seq A exon
GTATGTTGGTTTCTTTGCTGTTTAATGAAGGAAGAAATACTTTCCTCGCACCTTTCTTCTAGGGATGTGAAAATGCTCTTATGTGAATGAAGTCCGAAGAACGTCTTTGCACGTAGTGGTCCATGTTAGTCATGAAAATTTGATTGGAAACCTTTTCACTGTTTCTCAGAGAGAGAGTGACAGAATCAATGACAGAACTCAAAAACCTAAATTCTTCATTGTCTGCATAAATTACAAGGCATTACCTACCCTCTCATTTAATACAGTTTGGAAACAAATCTTATTAAGACAGGATAGTGAATAATTTTTCCTGATCTTTAAGATGATACAAAGTTTTCCTTTCTAG
Seq C2 exon
GTCAAGCAAATATATCTTAAAGTGGCCAAGAGGATGAAAGAATATGAAGATCAGAAATATGATCAGTGGAGACATGAGACAGAAAAGATGCTCCCACTGTTATTGGAAAAAACTCTGCTGATAGTCATTACTGATGGGCCGGCAACTCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003170:ENSGALT00000005023:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(10.1=100)
A:
NA
C2:
PF083857=DHC_N1=FE(8.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAATCTTTGTTCAAAACCTCATGGA
R:
GAGTTGCCGGCCCATCAGTAA
Band lengths:
310-656
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]