BtaINT0050174 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016523 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr17:54141807-54143366:-
Coord C1 exon
chr17:54143213-54143366
Coord A exon
chr17:54142041-54143212
Coord C2 exon
chr17:54141807-54142040
Length
1172 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
3' ss Seq
CTTGTCATATTCCTGACTAGGCT
3' ss Score
7.48
Exon sequences
Seq C1 exon
GCATTGGAAAGAGCTTATGGAGAAAACGGGCGTGATTTTTGAAATGACTGAAACATTCACCTTGGAAAACATGTTTGCTATGGAACTTCACAAACACACGGATGTTCTCAATGAGATTGTGACGTCGGCCATTAAGGAGATAGCCATTGAGAAG
Seq A exon
GTAGGACTATTTTTAGTTATAAAGCAGGCTAGAAAAAAAAAAGAATTTTTTTTTTATTCAGAGAGAAAACCTGTTTGTTCTGGGACCTGTTATGTTTGAATAAGAAAGTATTATTTGTTCTAGAAATAGAATTCCTGCCTCAGTTAAATATTTTAATTGTTTCTATAGTTTCACTTTCAACTTACTTACTAAAGAAATAATGTGTTCAAGGTAGAAAACTGAGAAAATAAACAAATCACTCATAAATTCCACCACCTGAAGATAAATTATTAACATTTGAGTGTACATTCTTTAATGCTTTGAAATGCCTGTGCAGGGAATTCCCTGTGGTCCAGTGGTTAGGGCTCTGAGCTTCCACTGCAGGGGCACGTGTTCCATCCCTGGTTGGGGAACTAAGATCCCGCATGCTGCATAGCATGGCCAAAAAAAGTGCATATACACACATATACACACATGTACACATATAAACATATATCCACACATACACACTACAGAGATATAAAAACACACATACACACACCAACATGTACATGAGTACCATGCCCACATACATACATGCTCTCACACATGCACACATATAGGTGTACATAAATACTAATATATCACCCATACGTGCACACACATGCATGTACACATGTGCATACACTTACACACGTGATGTACACAGATACATATGCACACATGCACATATATACACACATCTGTGTGTATATACACATACCCATAATTATTGACAGGTGGTTTTTGAACATGCCATGAAAAGACAAATTTTTTGTAATTTGATCTTCTTGCTAAACAGTAAACACAGAGGCAGTATCTCATGAGCATGCAGATTGGAGGCCAATTACAGAATTTAGACCCTGGCTCTGGCACTCAGCTGAGTGAACGTGGCAAGCCATTCCCAGTTCCCACCTCTGCGAAAGTGTGGAGAATAATAATCCCACCCTTGCGGGGGTGCTTTGAGGACTAGAGGAGATGGTGTATAGCATGTGCTTACCTGGCACAGAGCAAGAACTGGGCAACTGACAGCTAGAATGGCCAGCCTCTCTGGAACACTGACCCAGAACTCCAGGTTCAGGAGCTGATCCATGGCAAACTCAGGAAGCTCCTGTTGGGTTGGGTTGTTTTTTCAGCCCATGTGCCTGAACCATTCTTGTCATATTCCTGACTAG
Seq C2 exon
GCTGTGAAGGAAATCCTGGACACATGGGAAAATATGAAATTTAATGTGGTCAAGTATTACAAAGGCACCCAGGAGCGAGGCTACATCTTGGGGTCTGTTGACGATATCGTCCAGTGCCTGGATGACAACACTTTCAACCTGCAAAGCATCTCAGGAAGCAGATTTGTGGGACCTTTCCTGCAGACAGTTCACAAATGGGAAAAAACGCTTTCTCTCATAGGCGAAGTCATTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016523:ENSBTAT00000029664:26
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(12.3=100)
A:
NA
C2:
PF083938=DHC_N2=FE(18.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTTATGGAGAAAACGGGCG
R:
TCCCATTTGTGAACTGTCTGCA
Band lengths:
343-1515
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development