DreINT0009108 @ danRer10
Intron Retention
Gene
ENSDARG00000061486 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr5:27729154-27730526:+
Coord C1 exon
chr5:27729154-27729310
Coord A exon
chr5:27729311-27730292
Coord C2 exon
chr5:27730293-27730526
Length
982 bp
Sequences
Splice sites
5' ss Seq
AAGGTTAAA
5' ss Score
2.7
3' ss Seq
ATTTGTTTATATTTTTACAGGGA
3' ss Score
8.82
Exon sequences
Seq C1 exon
GCACTGGAAGAGCCTAATGGAGAGGACAGGTACTAACTTTGAGATGAACCCAAACACCTTCACTCTTGAAAACATGTTCGCCATGGAACTGCACAAGTATGGTAACGTCATCAGTGAAATCGTCACCTCAGCTGTCAAGGAGCTTGGCATTGAAAAG
Seq A exon
GTTAAACAATTATTAGGAATATTCATGAAGAAAATGTTCATTAAGTTTCAGCTGTGGTTCTTAATGAACATTCCGTCATCACGTACTCCCCTTCATGTTTTTTCCAACCCGTATGCATTTGATTCTGTTTTGGAATTTGCCAGGTCCTTCCTGTTTCTCTCTCTAACCTAGCGTCCTCCAATTCACTGATACTATTCCATAACAGTAAAGGCAAAAATGTAAACTAAAGGAATTGAACAGAGTTTTTTTTTTAAATAATTAGGGTGATTAAATCAAATCAAAACCCATGTAAAATAGAGACACATTTAAACTCGTTGTCAAACTTTTTGCATTGTTTGTATGTCAGGATTGTGATAATAGGGTATATGCAGAAGGACTTTTAATTTTCAGTCAACCATTTAAAGTGATTCCGGTGAACTGTATGCCATTACTAAATTGTTTGAAGTCTGTTTTCTTCAGAAATCAATGATCTTCACTGCCTGATTGTATATATGATATAAAGTTTATCTCAGAATGTACAAGAAGCACTGCACTAAATAACATTTTTCTGTGCCATGTCTTTAAAATTCATTAATTCATTTTCTTTTCGGCTTAGTCCCTTTATTAATCTGGGATCGCCACAGCGGAATGAACTGCCAACTTATCCAGCATTTGTTTTACTAGCGGATTTCCTTCCAGTTGCAACCCATCACTGGGAAACATTCATACTCACTTATTCACACACATACACTACGGCCAATTTGGCCAATGATGGCACAAGTGTGTAAACGGCTTTTCTTCACATTTTACACTAAATGAATGCTTAAGTCTATTTAACTGATTATATTTTAATTACATTACAATGTCAATGCTGTAAAAGGAACCATATAAAATAAAAAAAAAGTCACTTTAACCCTTCACCGGACATTTATCATTGGGGGGAAAATACTAGTTATGCAAATACCCTATTGATTACACAGTGTATTTGTTTATATTTTTACAG
Seq C2 exon
GGAGTAAAAGAAGTGGAAGAAACATGGGATAGTATGAAGTTCACTGTGCATCGATACTTCAAAGGCACACAAGAACATGGTTTCATTCTTGGTGCTGTGGATGACATCCTTCAACACCTGGACGATGATGCCATGAACCTGCAGAGCATGGCAGGCAGCCACTTTGTTGGTCCCTTCCTGGCCACCGTTCAACAGTGGGAGAAGAATCTATCACTTATCAGTGAGACTATTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061486:ENSDART00000135878:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(12.6=100)
A:
NA
C2:
PF083938=DHC_N2=FE(18.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCTAATGGAGAGGACAGGT
R:
CTTCTCCCACTGTTGAACGGT
Band lengths:
351-1333
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]