MmuINT0050587 @ mm9
Intron Retention
Gene
ENSMUSG00000038011 | Dnahc10
Description
dynein, axonemal, heavy chain 10 [Source:MGI Symbol;Acc:MGI:1860299]
Coordinates
chr5:125249166-125251037:+
Coord C1 exon
chr5:125249166-125249319
Coord A exon
chr5:125249320-125250803
Coord C2 exon
chr5:125250804-125251037
Length
1484 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGG
5' ss Score
5.87
3' ss Seq
TTTTTCATTTCTCCAACCAGGCC
3' ss Score
10.7
Exon sequences
Seq C1 exon
ACACTGGAAAGAACTCATGGAGAAAACGGGCGTGTTCTTCGAGATGACGGAGACCTTCACGCTTGAGAACATGTTCGCCATGGAGCTGCACAAGCACACGGAGGTGCTCAACGAGATCGTCACTGCGGCCGTCAAGGAGGTCGCCATCGAGAAG
Seq A exon
GTGGGGAAGGAGAGCCTTCCATTTCCCTGCCGCAGCTGGGTCCAGGGCCTCTCACATGCTCGGCGGGAGCTCTGCCTCTAAGCCACTCCTCTTGAATCTTCCATTCACTGGGATGTGTTTTTAACATGTAGCCAAGGCTGGCCTTGAACTTGTGATCTTCCTACCTCAGCTTCCGGAATGCTGGGATCACAGGACGCTCCACTGCTCCCAGCAAAGGCTGTCTTTTCAAACTTTCTCTAGTATCTAATAAATAGAACCTCTGACTTAGTTTACTTTTTTGGCATCCCTGATTATAGTTTCATATTTTACTTATTGATGAAAAAATGGGCACCCTTTGGAAAAAAAATGACAAATAATCTCAGCACTCCCAGCCTGGACACCTGAAGACAGGTGTTGTTATCCTACTAAGTGTTGCTCCCTACTTAAGATTGAAGTACTTACCATGAGAGCAGGAAGATGCCAGGAAGATGCCACATGAACCCATTTTACATAATGGATACAAGCTAACAAAAAGCTAAAAGATGTGTGGACACATCCATACACACACACACACATATCACATACAATAGTGTACATATATGCAAGAGGTATGTGTATGTATTCATATACACACCTCTAAACAAATACATTTACATAGTATGTGTAGATAATGTCTTAGTTACATTTCACAGTGTTGCAACAAAATACCCCTACAAAAGCCACTGAAGGAGGGAAGAGCTAAACAGTTTAAGGGCACAGTCCATCAGGGTGAGGACGGCATGGCAGGAGCACTGTGAGGCACCTGGCCACATAGCATCTGCAGTCAGGAAGCAGAGATAGATGAACACTAATGCCTAGCTTGCTTTCTCTCTTTTTTTTTTTTTTCATTCAGTCCAAGACCCCAGCCTAGGGAATGGTGCTACCCACAGTGGGCAGATCTTTTTTAACTGAACCTAATTAAGAGAATCCCTCAGAGGTATGCCCACCAGGGGCCTGTCTCACTGGAGATTAATTCACACTTATAGTAAACATCTACATGTAGGCATACACATGAGCACATATCAGTGTGGATTTCTTCAGAGAATGGAATGATAGTGGGCTTTGCATTTTGAATATGGACTTTCTCGCTCAGCAGTGGAGTGAGCACAGGGCAAGACCCCCTGGTTGAATAGGAAGCTGCTGGGTTGAGACACCAGTTTTGGTATTTGGCAGCATCCCCAGGACCCCACGTGGCCTTTCTGAGCCTGTCTCTGTGTTTTTTTTTTTGTTTTGTTTTGTTTTCTTTTTGGAGTGAGGGTCAGATGAGATCCCACATGGCAGACTGTGAGCCTGGTGGACAGGAACACTCTTGCTGTGGAGAATCTCAACTTCTCCTGTGATTGAGCTGGGACAATAAATAGGTTGAGTTGCAGACAGATGGTGACACACTAGGGAGGAGGTGGCTCTGTTAGGGTCTTGATCTTCAATCTGTGGGCTTGAATGTTTTTTTTCATTTCTCCAACCAG
Seq C2 exon
GCCGTGAAGGAAATCCTAGACACCTGGGAGAACATGAAGTTCACCGTGGTCAAGTACTACAAAGGCACGCAGGAGCGAGGCTACATCTTGGGGTCCGTGGACGACATCATCCAGTGCTTGGACGACAACACAGTCAACTTGCAGAGCATCTCCGGGAGCAGATTCGTGGGGCCTTTCCTGCAAACCGTCCACAAGTGGGAGAAGACACTGTCTCTGATAGGCGAGGTCATTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038011-Dnahc10:NM_019536:26
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(12.3=100)
A:
NA
C2:
PF083938=DHC_N2=FE(18.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTCATGGAGAAAACGGGCG
R:
GTCTTCTCCCACTTGTGGACG
Band lengths:
349-1833
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: