BtaINT0050223 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016523 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr17:54048771-54049209:-
Coord C1 exon
chr17:54049000-54049209
Coord A exon
chr17:54048867-54048999
Coord C2 exon
chr17:54048771-54048866
Length
133 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAAG
5' ss Score
6.66
3' ss Seq
CATGTTCCTCCTCTTTTAAGGTC
3' ss Score
12.15
Exon sequences
Seq C1 exon
GTTGTCACTGAGCCACCCAATGGGCTGAAACTCAACATGAGAGCCACGTACTTCAAGATCTCTCCTGAAATGCTGGACCAATGCCCACACCCTGCTTTCAAGTCCCTGGTCTACGTGCTGGCATTCTTCCACGCAGTGGTGCAGGAGAGGAGAAAGTTTGGGAAGATCGGCTGGAACGTGTACTATGATTTCAACGAGTCTGACTTCCAG
Seq A exon
GTGAAGATGCGGCTGCTGCCTCCGCCCGGGGACACTCCTCTCTCAGTGGTTCCTGCCCGTGTTTTCAGAAAATGGTCAGAGCCTGGCTGGCTGTGGGTTTGTGGATACCCAGGCATGTTCCTCCTCTTTTAAG
Seq C2 exon
GTCTGCATGGAAATTCTGAACACATACTTGACAAAAGCCTTCCAGCAGCATGACCCTCGGATCCCATGGGGTAGCCTCAAGTACCTCATCGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016523:ENSBTAT00000029664:71
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(9.7=100)
A:
NA
C2:
PF0302810=Dynein_heavy=FE(4.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGTCACTGAGCCACCCAATG
R:
GCTGCTGGAAGGCTTTTGTCA
Band lengths:
258-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development