DreINT0009154 @ danRer10
Intron Retention
Gene
ENSDARG00000061486 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr5:27770736-27771112:+
Coord C1 exon
chr5:27770736-27770945
Coord A exon
chr5:27770946-27771016
Coord C2 exon
chr5:27771017-27771112
Length
71 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
3' ss Seq
TATGTTTGTTTCATTATCAGGTG
3' ss Score
9.59
Exon sequences
Seq C1 exon
GTTGTCACAGAACCTCCAAATGGGCTGAAGCTGAACATGAGGGCCACGTATTTTAAGATCTCTCATGATAAGCTGATGAACTGCGCTCACCCAGCCTTTCGCAGTCTGGTTTATGTGCTGGCTTTCTTCCATGCTGTAGTTCAGGAAAGACGCAAGTATGGCAAAATCGGATGGAATGTGCCTTATGATTTCAACGAATCAGATTTTCTG
Seq A exon
GTAAGTTTGCTTTAACAGGAAGGTCCCTGAAAGTTTTCATTGCTTTTTAATTATGTTTGTTTCATTATCAG
Seq C2 exon
GTGTGTATGGAAATCTTGGACACCTATTTGACCAAAGCCCAGAATCAAGGAGATGAAATAATACCATGGGGAAGTCTGAAATACCTAATTGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061486:ENSDART00000135878:62
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(9.7=100)
A:
NA
C2:
PF0302810=Dynein_heavy=FE(4.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCCTTTCGCAGTCTGGTTT
R:
CCTTGATTCTGGGCTTTGGTCA
Band lengths:
169-240
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]