BtaINT0050226 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016523 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr17:54045681-54046198:-
Coord C1 exon
chr17:54046067-54046198
Coord A exon
chr17:54045893-54046066
Coord C2 exon
chr17:54045681-54045892
Length
174 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
3' ss Seq
AAAACGTGTCCTGGTTTCAGGGG
3' ss Score
6.97
Exon sequences
Seq C1 exon
AAGCCATTGAGGCCCTTCCGCTGGCCAACACGCCTGAAGTGTTTGGTCTTCACCCCAATGCTGAGATTGGATATTACACTCAGGCGGCTCGAGACATGTGGGCTCACCTATTGGAGCTGCAGCCCCAGACAG
Seq A exon
GTAAAGTCCCCTGCAGACAACTGTGCTCCTGGGGGACTGAGGGCGTTGGTCCAAAGTGTGCTGCTTTGGTTTCTGGTAGTTTCCACATTGCTGGTGCCTTTCATCGAAGGCGCTGGATACCCTGGTCCCATGCTCAGGTGCCTTGCTGTCTCTAAAAACGTGTCCTGGTTTCAG
Seq C2 exon
GGGAATCCAGCGCTGGCATCAGCAGAGATGATTACATTGGCCAGGTGGCCAAGGACATAGAAAACAAGATGCCCAAAATCTTTGACTTGGACCTGGTCAGGAAGCACCTTGGGCAGAGCATCTCCCCAACCTCGGTGGTCCTCCTGCAGGAGCTGGAACGCTTCAACAAGCTCGTCATACGGATGACCAGGTCCCTGGCTGAACTTCAGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016523:ENSBTAT00000029664:74
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(6.2=100)
A:
NA
C2:
PF0302810=Dynein_heavy=FE(9.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATTACACTCAGGCGGCTCGA
R:
GGGACCTGGTCATCCGTATGA
Band lengths:
256-430
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development