DreINT0009157 @ danRer10
Intron Retention
Gene
ENSDARG00000061486 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr5:27773321-27774450:+
Coord C1 exon
chr5:27773321-27773452
Coord A exon
chr5:27773453-27774238
Coord C2 exon
chr5:27774239-27774450
Length
786 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCT
5' ss Score
8.16
3' ss Seq
CTGGCATGTATAATTTTTAGGTG
3' ss Score
7.44
Exon sequences
Seq C1 exon
ATGAGATCGAGTCGCTGCCTCTTGCTAACACTGCAGAGGTGTTTGGTTTGCACCCTAATGCTGAGATTGGATATTACACTCAGGCTGCCCGGGACATGTGGACTCATCTTATTGAGCTCCAACCACAGACAG
Seq A exon
GTACCTGGTTTTATTGTTATTTTATATAAAATATACAGTTGAAGCCAGAACCTCCCTGTATATTCCCACTATATATATATATATATATATATATATAGTATTATATTGATTATTCTATATATAATCGATATGATCATTGTTCCACTATAAAATATAGTATATGTATTAATAGTATAGAATTATTGATAATAAATATATATATATATATATATATATATATATGGGCCAAAAATAAGACAATTATTGTTGTCAGCAACTAATAAAGCATGTTAAATGCAAGTTAAGTATCTTTTAATTTTTTAAAAAAATTTTGAAATATGTAACTGACAATGTTCTAGTGTCTTTCGGTGTAATATGTTTATGTGAACTTATTCAGGCCAGTACTTATATAAAATTACGTGATCATAATAAATTTAATTCTATTTGACATGATGTTTGTGACATACAGATGCTAAATAAAGATTTAAATGATAGTCGCAAATTATAACAATTAATAATGAAACTAGTTTTGTATTTTGGTCCTGCTCTATGATCCATAAACTCTTTTAATATAAAGCATTTTAATATTTGAACAAAGGATTCTTGTTCTGAATTTGCCTGACATTATTTCTTTTTAAATATATATTGAGGAAAAAAGGTAAAGCTGTTAAATTTTTTATTTTGCTACTGCAATTGAAAGCTCTTTACATCTTCATTTAGCGAATTATCCTCTGTTGTTGATTTAGTTTTTTTTTTTGAAAATGCTTGCTGCTTGTAAATATACTTTCTGGCATGTATAATTTTTAG
Seq C2 exon
GTGACTCAGGCGGTGGTATCAGTCGAGATGAGTACATCAGCCAGGTGGCGAGGGACATTCAGAGCAAACTGCCTGAAGTGTTTGATCTGGACGTGATCCGCAAGAAGCTGGGACTGGAGATCTCTCCTACATCTGTGGTACTGCTTCAAGAGCTGGAGCGCTTTAACAAACTCACCGTGAGGATGAGCCGCTCTCTGGCTGAGCTACAGCGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061486:ENSDART00000135878:65
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.022 A=NA C2=0.028
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(6.2=100)
A:
NA
C2:
PF0302810=Dynein_heavy=FE(9.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAGATCGAGTCGCTGCCTC
R:
TCAGCCAGAGAGCGGCTC
Band lengths:
334-1120
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]