BtaINT0050264 @ bosTau6
Intron Retention
Gene
ENSBTAG00000013078 | DNAH11
Description
dynein, axonemal, heavy chain 11 [Source:HGNC Symbol;Acc:HGNC:2942]
Coordinates
chr4:30575853-30576950:+
Coord C1 exon
chr4:30575853-30576047
Coord A exon
chr4:30576048-30576872
Coord C2 exon
chr4:30576873-30576950
Length
825 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAAA
5' ss Score
1.18
3' ss Seq
TCTGGTTGTTCGGTCTGTAGGTT
3' ss Score
7.76
Exon sequences
Seq C1 exon
GTACTCATGAGAGCATTAAGGGACTTCAATATGCCTAAAATAGTGACTGATGACACCTCTGCGTTTTTGGGCCTCATTGGTGACCTGTTTCCATCCTTGGATGTGCCCCGGAGGAGAGCACCCCACTTTGAACAGATGGTCAGGCAGTCCACTGTGGAGCTCCGCCTGCAGCCTGAGGAAAGCTTCATCCTCAAA
Seq A exon
GTAAAAGGAGAGTTCCCTTGTCACGCAGCCCTTGGGATATTCAATGCCCATAACTGCAGTGATGTGATACTCAGCCAAAACATCACCTTACATATTCCACTGACCTTAAGATGCTCTTGATACATACTTTACAGCATTCTAATATGGAAGTCTTTAGTAAAGTAAATATAAATATTGTCCCATTTTTGAGAAGGTGAACATATACAGATATGATTAAGTCATGGTTTTCAATATGAACAGACTTTTCATTAGTTTATCTTGATGTGCAGCAAAAATTAATTTTGCTATCTTTTCTCTCCATCTTAAGAAAGGGTAGAAGTAATAAAATCATTAGCACATGTTTATAAGCGGGGAGAAACGTCCATATGTATGACATCATTTGACTTCTCAAAGGCTTGTGCATGTGCTTGCTCATTTGGCATATAGTGAATATACATGAGTGTTAAAATACATAAAGGGCATCTGTTTTCGATGCTTCAGAGGATATGTGATTAGGTATAGATGATATTAGCCGTATACTGTTTCTGGTCACAGTTCATGAATGTTACTGATTTTCAGACTCAGTCCTGCCATGTACCAAGTACTTCCATACGTCACTTCTGCCTGTGCCCGTGACTCATTAACTAATGGTTGTTCTTCATTCTCATCCTCATATTCTACATTGGGAGATCTGGGAGAAACTATACTTTGCACTTGTTATCTCTGAATTTTCCCGGAATATAATGCTGCTGGTGGGGTCTGGCTTGAGTTGTAAGAAAAGAACTTGGCAAAAATGGGTAGATTTTTTTTTTAAAGGAAACTAGTGTCTGGTTGTTCGGTCTGTAG
Seq C2 exon
GTTGTTCAGCTTGAGGAGCTGTTGGCTGTGCGACACTCTGTCTTCGTCGTTGGAAATGCAGGCACAGGGAAGAGTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013078:ENSBTAT00000061103:38
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF077289=AAA_5=PU(8.9=50.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCATGAGAGCATTAAGGGACT
R:
CTTACTCTTCCCTGTGCCTGC
Band lengths:
271-1096
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]