RnoINT0048669 @ rn6
Intron Retention
Gene
ENSRNOG00000005451 | Dnah11
Description
dynein, axonemal, heavy chain 11 [Source:RGD Symbol;Acc:621088]
Coordinates
chr6:145949759-145951689:-
Coord C1 exon
chr6:145951495-145951689
Coord A exon
chr6:145949837-145951494
Coord C2 exon
chr6:145949759-145949836
Length
1658 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAAA
5' ss Score
1.18
3' ss Seq
TGACAACTGTCTGTGTGCAGGTT
3' ss Score
9.43
Exon sequences
Seq C1 exon
GTGCTCATGAGAGCATTGCGAGACTTCAATATGCCTAAAATTGTAACTGATGATGTCCCAGTGTTCCTGGGCCTGGTTAGCGACCTATTTCCAGCCTTGGATGTGCCTCGGCAGAGGAAACCACACTTTGAACAGATGGTCAAGCAGTCTACCCTGGAACTCCGCTTGCAGCCTGAGGAGAGCTTCATCCTCAAA
Seq A exon
GTAAAAGATATGTTACTCTTGATGGCAGGTGGTGGGGTTGGTAGTCCAAGTAACTTCCTGAGTGTTATTTATCCAAAACATTAACTACATTGCATGGCTTTAATATGATCTTATTAAATACTTTCAAGCATTTGATACAATAGTCAGCTAAGAAACACCTAAGTAAATGCTTTGATAACTAGTCTCTATCACCGAGGGCTTAAAAACATAGACATGACTGTCATGACTCTAAATGTAACAATACTTTTAGCTAATTATAAAACTTCTGGGTAACACGCACCAAAACTGTATTGTGTTCTCTCTTCTCCAATCCATGTATAATGAAATTAAAATCATTGGTTATCTTGTTGGGGAGTCATGTCAGCTCTGAGGAAGGGACTGTCTGACTTGTACAAAGCTGTGCCCAGGCAAGGCTGCATTGGGGTCAGTGAACACATGGCCAACAATGCGTGAAAAGTCTGCGTTTCAGATACTTTGTGTGATGTGAGCCATCACTCCCCTGTAGCCAATGATTGCTATTCCTCATTTCTGCTCAAAACTCTGTGAAGAGTCATTGATTTTGTAAGTAACTCCCCCTGCCATGTACCAAGTATCATATAGAGTTATGAAATAGGGGCTAGGGAGATGGCTCAGTGATCGAGCATGAGCACAGGAGAACAAGCATGAGGACAGGAGAACCTGGACTTGAATTCCCCAATCCATATGAAGCCATGTGCAGCTGTATGTGTTTCTCACCTCAGTGTAGAGACAGATAGATTCAGGCACCTCATTGTTCTCTAGACAACAAGGTAAAGAACGAGAGAGCAGGGAATTCAGCATTAATCTCGGACCTTCACACATACATGCACATGTGTGCTGCATAAGTGGTGCTGATGATGCTGAAGATGACAATGACAATGACAGTGGTGATGACAATGACAGTGATAATGATGGTGACAGTGACAGTGACAGACGATGATGATGATGACAGTGATGATGGTGATTATGATGACAATGATGGTGACTATGATAATGACAGAGATGATGACAGTGGTGGTGGTGATGGTGACAATGACAGTGCTGATGACAATGACAATGATGACAGTGATGATGACAACGATAGTGACAATGACAGTGGTAATGATGACAATGACAATGGAGATGGTAATGATGACAATGGCAGTGGTGATGATGGTGACAATGACAGTGATGATGATGCTGACAATGATGGTGGTGATGATATGACAATGATAGTGCTGATGACAATGAAAATGATGACAGTGATGATGATGACAGCAACAATGGAGATGATAATGATAATGATGACAGTGATGGTGACACNNGACAACGGCGATGATGGTGACAGTGATGATGATGATGACAATAATAATGGTAATGACAATGACAGTGATGATAATGATGATGACAGAGATGATGACAATGCCAATGGTAATGATGACAATGATGAGGACGGCAGTGGTGATGATGATGATGACAACAATGACTTCCTATTACTCTTATGTCTGCTTTTTATGTGGGAAATCTCTAAGAAGCTGTGCTATGGACTTAGTCTGTTCTCCCACATGTCAGTGGGACCTAAGTAGTGGGAGCTAAAGTGAATGAGACGTCTTTCGGCCACTCGGTCATGAAAGGCCTAAGTGACAACTGTCTGTGTGCAG
Seq C2 exon
GTTGTCCAGCTTGAGGAGCTGCTGGCCGTGCGGCACTCCATCTTTGTGGTTGGAAATGCAGGCACAGGAAAGAGTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005451:ENSRNOT00000007233:45
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.014 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF077289=AAA_5=PU(9.5=50.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCATGAGAGCATTGCGAGACT
R:
CTTACTCTTTCCTGTGCCTGCA
Band lengths:
270-1928
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]