HsaINT1011334 @ hg38
Intron Retention
Gene
ENSG00000105877 | DNAH11
Description
dynein axonemal heavy chain 11 [Source:HGNC Symbol;Acc:HGNC:2942]
Coordinates
chr7:21704434-21705537:+
Coord C1 exon
chr7:21704434-21704628
Coord A exon
chr7:21704629-21705459
Coord C2 exon
chr7:21705460-21705537
Length
831 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAAA
5' ss Score
1.18
3' ss Seq
ACCAGCTGTTTGCTCTGCAGGTT
3' ss Score
9.71
Exon sequences
Seq C1 exon
GTACTCATGAGAGCATTAAGGGATTTCAATATGCCCAAAATAGTGACTGACGACATCCCAGTGTTTCTGGGCCTGGTCGGTGACCTGTTTCCAGCCCTGGATGTGCCCCGGAGGAGGAAGCTGCACTTTGAACAGATGGTCAGGCAGTCTACCCTGGAGCTCCGCCTGCAGCCTGAAGAGAGCTTCATCCTCAAA
Seq A exon
GTAAAAGGAGCATTTGCTTTTCATGGCAGCTGTTGGGATTGTCAGTGGAAATAATTGTGGCTAATTGATACTAAAGCAAGATGTTAACTTGTACCCTAACCTTAATAGGATCTTAATATATGCTTTCAAGCATTTTCATATGGCAGGATTAAGTAAACATAAGTAAACATTTAAGTAGCCCCTCTCCGTAAGGTGAAAACATAGATATGATTTTCATGGCTTTAAATGTAAGCATGCTTTTAATTAGGTTACAAAACTTGTTGGTTCTTCGAGACATGCACTAAAAATTTACTTTGTTCTTTCCTCCTTTTTAGAGAACATTGGAAGTAAAATCATTAGTGCCTGCTTTTAATGAGGGAAGAATGACAACATGTATGAGAATAACTTAAGTAGATATTATCTGACATATCAAAGCCTCGTGCATATTTTTCAATTTGAATTCAGTGAATGCATGGATATTGAACACTATATACATTATCCATTTTAGATATTTTATAGGATATAAATCATTAGTTGTAGATAGTGATTGGCTATGTACAGTGTTTGTTCAAAACTCATGAAGAGTTAATGATTTTTGTAAGTAACCCCTGCCATATACTGAGTACTGCGTAAAATCGTGGGTTGGCTTTAGTCTCAGCCCTGTGGTCTACATGGGAGATCCAGGAAAAACTATACTTTTCACTTATGGTCTATTTTAACTTTCTCTGAACATACTGTTGTCAGTGGGGGCTGGCTTGGGTGTAAGGAAAGAAGAATTGGGCAAAAATGGTAGATTATCTTTTTGTCACCAACTCCTTAAAGGAAACCAGCAACCAGCTGTTTGCTCTGCAG
Seq C2 exon
GTTGTCCAGCTTGAGGAACTGTTGGCTGTGCGGCACTCGGTCTTTGTAGTTGGAAATGCAGGCACAGGAAAGAGTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000105877:ENST00000409508:38
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.010
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF077289=AAA_5=PU(8.9=50.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTACTCATGAGAGCATTAAGGGA
R:
ACTCTTTCCTGTGCCTGCATT
Band lengths:
270-1101
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains