MmuINT0050678 @ mm9
Intron Retention
Gene
ENSMUSG00000018581 | Dnahc11
Description
dynein, axonemal, heavy chain 11 [Source:MGI Symbol;Acc:MGI:1100864]
Coordinates
chr12:119282226-119284182:-
Coord C1 exon
chr12:119283988-119284182
Coord A exon
chr12:119282304-119283987
Coord C2 exon
chr12:119282226-119282303
Length
1684 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAAA
5' ss Score
1.18
3' ss Seq
TGACAGCTGTCTGTATGCAGGTT
3' ss Score
7.13
Exon sequences
Seq C1 exon
GTGCTCATGAGAGCATTGAGGGACTTTAATATGCCTAAAATTGTAACTGATGATGTCCCAGTGTTCCTGGGCCTGGTTAGCGACCTGTTTCCAGCCCTGGATGTACCTCGGCAGAGGAAACCACACTTTGAACAGATGGTCAAGCAGTCTACCCTGGAACTTCGCCTGCAGCCCGAGGAGAGCTTCATCCTCAAA
Seq A exon
GTAAAAGACATATTACTGTTGATGGCAGGTGGTGGGATTGATAGTTCAAGTGACTTTCCAAGTGTTATTTATCCAAAACATTAACTATATTACATGACTTTAATATGATCTTATCAAATACTTTCAAGCATTTTGTACGATAGTCAGCTAAGAAACATCTAAGTAAATGCTTTGATATCTAGTCTCTATCAAGGAGATCTTCAAAATGTAGATATAACTGTCATGACTCTAAATGTAACCATACTTTTAGCTAATTTTAAAACTTCTGGGTTACATGTGCCAAATTGTATTGTGTTCTCTCTTCTCCAATCCATGGATAATGAAAGTAAAATCATCAGTTATTTTTGTTGGGGGAGGCATGTCAGCTCTGAGGAAGGCACTGTCGGACTCATACAAAGACAAGGCTGCATTGGGGTCAATGAATACATGATCAACAATGCATGAAAAGTATGTGTTTCAGATAGTTTATGTGATGTGCGCCATCACTCCCCCGTAGGCAATGATTGCTATACATCATTTCTGCTCAAAACTCTGTAAAAGAGTCATTGATTTTTGTAAGTAACTCCCCCTGCCATGTATCAAGTGTCAATCAAATAGGGACTGGGGAGATGTCTCAGTGAGTGAGAGGGCTTGCTGCAAAAGCATGAGGAGAGGAGAACCTGGATTTGAACTCCCCAATCCATATGAAGCCATGTGCAGCTGGATGTACTTCTCACCTCAGTGTAGGGACAGACAGATTATAGAGACAGAACACTTCATTGTTCTCCAGACAGTAAGGTAAAGAAGGAGAGAGCAGGGCACTCAGCATGAACCTTGGGCCTCCACACATATGTACACATGCATGCTGCACAAGTGATGCTGATGATGCTGATGATTATGATGACAGGACAAAGACAGTGGTGATGACAATACAGTAGTGGTGATGATAACAGTGACAATGATGATAGAGATGATGACAATGACAATGGTAATGATGGCCATGACAACAGTGATGATGATGATGACAATGATGCTGTAATGATGATGAGAGTGGTGGTGATGATGATGACGATAATAGAGATGAGGAGGAGGAGGAGGATGACAAGGGCAATGGTGGTGGTGATGATGATGACAATGACAGTGATGATGGCCATGACAACAGTAATGATGATGACAATGATGATAGAGATGATGATGATGACAAGGACAATGGTAGTGATGATGAGGATGATGATGATGGAGGTGATGACAATGACAATGGTGATGACAATGACAGTGATGATGACAATGGTGATAATGATGACAAAGATGACAGTGATGATGATGACAATGGAGATGATAATGATAATGACAACAGAGATGATGACAATGATGATAAAGATGACAATGACAATCATGATAATGGTGACATAACCTTGGTGATGATGATGTCATTGGACAATGACAACGGACATGATAATGACAACAGAGATGATGACAATGGTAATGATGACAATGACAATGGCAGTGATGATGACGATGACAACATATTGCACTCATGTCTGCTTTTTATGTGGGGAAACTCCAAGAAGCTATGGTGTGGGCTTAGTGTGTTTTCCCACATGACAGTGGGATCAGAGTAGGGTTGTAAGAGAGCTAAAATGAATGGGCTGTTTTTTGGTCACTCAGTCATGAAAGGGCCTGAGTGACAGCTGTCTGTATGCAG
Seq C2 exon
GTTGTCCAGCTTGAGGAGCTACTGGCCGTGCGACACTCTGTCTTTGTGGTTGGAAATGCAGGCACAGGAAAGAGTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000018581-Dnahc11:NM_010060:38
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF077289=AAA_5=PU(9.5=50.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCATGAGAGCATTGAGGGACT
R:
CTTACTCTTTCCTGTGCCTGCA
Band lengths:
270-1954
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: