BtaINT0050265 @ bosTau6
Intron Retention
Gene
ENSBTAG00000013078 | DNAH11
Description
dynein, axonemal, heavy chain 11 [Source:HGNC Symbol;Acc:HGNC:2942]
Coordinates
chr4:30576873-30579726:+
Coord C1 exon
chr4:30576873-30576950
Coord A exon
chr4:30576951-30579589
Coord C2 exon
chr4:30579590-30579726
Length
2639 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGG
5' ss Score
9.26
3' ss Seq
TTTTTCCTTTTCTCCCCTAGATT
3' ss Score
12.84
Exon sequences
Seq C1 exon
GTTGTTCAGCTTGAGGAGCTGTTGGCTGTGCGACACTCTGTCTTCGTCGTTGGAAATGCAGGCACAGGGAAGAGTAAG
Seq A exon
GTATGGTAAACACCTGTGAGCCTTGAACAAAACTGGCATAAGCGTGGGGCCGACATTCAGTCCTACTTGAGAGTTCCCTTCAGTGAATTTGCTCATAATTTGATGTTAGAATCTGAGACTCTGTATTGCTCTCTGATCAGTTGATATTCTTTTTCTTTATAATGAGGACAAGGAAAGAGGAATTAGTAGAACACTGCACTCAAGGAAAGTAAATGAAGGAAGACTGGGCTTTCCACGTGAGATAGCATCCTATTCACACATTTAGATGTATGCCCGCCTGTCTTACGCATCTTTCAGTAATATACCTGAATTCTTTTATCCAAAGTAGATATATTGAGAGACTCTAGAATAAGATACCCAGATTACAAGATTGGTTTTTCCCTACCCACATTTGTCAAAACTATTTTCTGATCTTTTCCAAGTTATCCTAGTTTCTCCTTCCCATATCACTGAGAAAAACCCAAATAGTTTTCTTCAGTGTCACTCTCTAGAGGCCAAAGCAGAACTTGAAAAGCAACGGAGGAAGCAGAAGCCACGTCTGTGAGGCACCTGTTATGTGCCGTGCCAGGTGCACGATGTGTGGTTTACTCCGTACAATGATGAGAGTCCACGGCTGCTGTTATCCCCATTTTTAGTTCACTGCTTGATTTTGTTTGGTCTTAGAGTCCTGGAAACATACTTTTTTGCTTGGCAGATGGTATAGGCAGAACTGCATGTGTTTTCATTGAGGGTGCTTGGGTAGAAACGTATTTAGTAACGGGAGACTAAAAATAAGTGTCGTGCGCACATGAGGCTTCAGGGCGTGGATGTCTACAGAACTTGCCAATGTTTAGATCAGAACTCAAAGTGGTACGCTTGGAAAGGGAGGCCCGGGATAGGGCTTTTTTCTAGTGAAAAATGTAATATTTGAAATATTAAAGTAGATAACTGATAGACCTGTAATTATTTTGTTAGAGTAAGTTTCAGATATGGGCTATGGTGAAAGGAAGGATAAAATTAAATTCTATCATTTTCAGTAGATTAATGGTTTCTAAAAATAGAAGCTTAATATTCCTAAGACATTCAATTTCTTTCATCCAGTCTTCACTGATTCTGTTTCTGTTCTATTCAACCTTTACTTAAGCTGATAGAACTAGAGCACCAAAACTTGGGGCCATACTATTTAGCAACATAGTATTCTAAGTATTTGGCAATTGTTTGTCAGCCCTTTAAACCCCTGTGAGCAAAAAGGATAGTTGGCTAGATACTTGGCTTAAGGCATCAGTTCGTTAAACAGATAAGTATTAAGTGCAGATTTTATTTTCTCGGTCTCCAAAATCACTGTGGACAGTGACTGCAGCCATGAAATTTAAAGACGCTTGCTCCTTGGAAGGAAAACTATGACAAACCTAGGCATATTAAAAAGCAGAGACATCAGTTTGCCAACAAAGGTCCATATAGTCAAAGCTATGGTTTTTCCAGTAGTCATGTATGGATGTGAGAGTTGGACCATGAAGAAGGCTGAGCACCGAAGAATTGATGCTTTTGAACTGTGGTGTTGGAGAAGACACTTGAGAGTCCCTTGGACTTCAAGGAGATCCAACCGTCCATCCTGAAGGAAATCAACCCTGAATATTCATTGGAAAGACTGAAATGCTGAAGCTAAAGCTTCACTACTTTGACCACCTGATACAGAGAGCCGACTCACTGGAAAAGACGCTGATGCTGGGAATGACTGAAGGCTGGAGGAGAAGGGACAACAGAGGATGGGGAAGTTGGATGGCATGACTGAGTCAATGGACATGAGTTTGAGCAAACTCCAGGAGATAGTGAAGGACAGGAAAGCCTGGCATACTGCAGACCATGGGGTTGAAAAGAGTCGGACACTGAGCGACTGAACAGCAAAACGACGTTAAGCATCTATTCTGTGAATTCCTAGCCTCAACGCTTCTTGTCCTCAATTACCTAGATCAGAGTTGCCCAGCTTCAGCACCATTGACATTTGGATCTGCTAAGTCTTTGTCTTGGGGGCCGGCCTGTCATTGCAGAATATTGAGCAGCATCCCTGGCCTCTGCCCACAAGAAGCCCAGCAGCACGTCCTCCTCCCTCAGGTCAAGATAGTCTCCTGTTGAGAACTTACTGCTCTAGGTCACCAGTTCTCACAGTACAGCTAGACAAGCCTCATAGGCATCACCTCAGACCTTGTTAGAACTCAGATCAGGCCTATCTGAGACCTACTAAATTAGAAACTCTGAGACTGGGTCTTTTAGTCTGTTTTAATACCTTTTATGCACTTTGGATGCAGGCTAAATTTTAAGAACCATCTAAATAATATAGGCAGAGCGGATGTTAACATCATGCACAGGAATAACATGTACAGGCCTTTACTTTGCACAGATGGTTAAAAATCTCAGTTGATGATGACTTTCTCTAGTCTACATTGTTGAAAGAATCAGGTGAACTGATCCTCAGGGATTGTAGGATTAAAGTTTCCAAGATGGGAATGAAAACACACACATGAAAATGTTTTCCCATTCTCAGTGCACTCAGGATATATAGGAAGATATAATGCGTAAGGAAAACCCTGCAGAAATCTTTTGCTTTTCATTTGGCTTACATTAGTATTAGTTTTCTTAGCTTTTTTCCTTTTCTCCCCTAG
Seq C2 exon
ATTTTGAGAACATTAAACCGAACATATGTTAACATGAAACAGAAACCCATTTGGAATGACTTAAACCCCAAAGCTGTGACAACAGATGAACTCTTCGGTTTCATACACCATGCTACCCGAGAATGGAAAGACGGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013078:ENSBTAT00000061103:39
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF077289=AAA_5=PU(8.9=50.0)
A:
NA
C2:
PF077289=AAA_5=FE(30.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]