HsaINT0049323 @ hg19
Intron Retention
Gene
ENSG00000105877 | DNAH11
Description
dynein, axonemal, heavy chain 11 [Source:HGNC Symbol;Acc:2942]
Coordinates
chr7:21745078-21747453:+
Coord C1 exon
chr7:21745078-21745155
Coord A exon
chr7:21745156-21747316
Coord C2 exon
chr7:21747317-21747453
Length
2161 bp
Sequences
Splice sites
5' ss Seq
AAGGTATAG
5' ss Score
7.98
3' ss Seq
TCTTTCCTCCTTCCCCTCAGATT
3' ss Score
11.96
Exon sequences
Seq C1 exon
GTTGTCCAGCTTGAGGAACTGTTGGCTGTGCGGCACTCGGTCTTTGTAGTTGGAAATGCAGGCACAGGAAAGAGTAAG
Seq A exon
GTATAGTAAATTGCCTAATAGCTTACAGCTATGGAAAGAACATTTGTTGTCATTGTGGTTCGGCCTATTTTCAATGCTACTCAAAAGAATTCCCCTCCATGAAGCCCACCATAATTTTGGGTCAGAATCTGAGACTGGAATCTTGCTGCTTGATCAATTGACATTCTTTTCCTTTATATTGGGTCAGCGGGGGGAGAACAAGAAACAAATAGAGGATTGCATTCACATAGGAAAAGCAAGCCAACATGAAGATTGAACTTTCCACGTGAGATGTTCAGTATCAGATGCAGGCATTTCGATATACACCATCCTACCTTATGCACCTTTCAATACATTTATGCTTGGATTCTTTTATCAAAGATAAACATATTAAGAGACTGTGGAATAAGATATCTGGCTGGAAGATTGGATTGGCTCTAGCCACATTTATCAAACCTATTTTCTTTTCCAAGTCATCCTTGATTCTCCTCCCCATATCATTCAGAAAAACAAACCGAAATATTTTCCTTCAGTACTCCCTCAGAAATATAACCCTCTATATGGCCAAACAAAACCTAAAAATAAAAGGAAGTGGCAAAACCCACATTTTTGATGTACCTATTATGTGCTGTGCTAGGTGCATTATGTATGATTTACTCGGCACAACAATGATATACTATGGGTATTATTATCCCCATTTTTAGTTCACTGCTTGATTTTGTTTGGTCTTACTGACAGTCCTGGAAACATACTTATTTTCTCGGTTGGCAGACGGTATATGCAGAACTGCATGCATTTTAATTCAGGATGCTTGGGTATAAACATACTTGGTAGCCAGCAGCTAAAAATAATCAGATTGAGCATATGAGATTTTAGAGGATGGCAGTATATGGAACTTGCCAGTATTTAGATCAGAACCCAAAGTGGAACAACTGTAAGAAAAAAAATCTCTGTATAGACATTTTTCTAGTGAAAAATATAATAAATGAAATATTAAAGTAGATAACTGATAGACCTGTAATTATTTTGTTAGAGTAAGTTACAGATGTAGGCCACAGTTCAAGGAAGGATAAAGTTAAATTCTATACTTTCCAGTGGATTAATGGTTTCTAAAAATATAAGCTTAATATTCCTAAGGCATTTACTTTCTTCTAGTCTTCACCAGTTCTGTTCTACTCAACAGGTACGTAACCCGAGATACCCGGAACACTGCAGCTCAGGGTGACGTTCTTTAGCATCTTATCATTTCAAAGTGTTTGCCAATTGTTTATCAGTTTTTCACAACCCTTGTGAGTAGGTCAGCATGATAAATATCTAAGACAAAAGCCACAGCTTTTCAAAGGAGCAAAAGGGAGAGTTAGGGCAGATATTTGAGTTAAAGTATTAATTAATTGAATAGACATACACTGAGCACCTGTTCTGTGAGTTCTCATTATCAAGGCTTTTCCTCAATTACCAGGATCAGGGTTTGTCAACCTCAGCACTGTTGACATTCTGGACTGGATAACTCTGCTGTAGGAGGCTATCCTGCTCATTGAAAGATATTTAGCAACCTCCCTGGTCTCTATCCACTGGATGTCCAGAAGCTCCTTCCCCCTTCTTCCCCCAAGTCAAGACAGTCTTTTCTTGAGAACCACTGCCCTAAGTCTCTAGGTCTCAAAGCATGGCCAGACCAGCATCATTGGCATTAGCTGGGCCCTTGTTGGAACTGTACATTACTGGCCCCACCTCAGACCTACTGAAATAGAAGCTCTGGGATTGGGCTCAGCAATCTGTATTTTAATACCCTCCAAACAGTTCTGTTGTAGGCTACATTTTGAGAAAAACCAATCTTGCTGATTCAGGCAGGGTAGATTTTGTAATCAACATAAATGCTTATTTATGTATGGTCCTCCACTTTGTACACATGATTAAAAATCTCAAGTGAGAAAGTGACTCCCTTTAGTCTAAATGGTTCAAAGAGTCAAGTGAACTGATTCTGTCTTGCTGAGTATTTGTAAGATGAAGCTTTTCAAGATGGTAATGGGAATGCACACATGTGCATTTTTCCCCTTCTCGATCTTAGCACACACACAGCATCTAGGAACATATAATGAATACGGAAAACTCTTCAGAAATCTTTTACTTTCCATTTGGCTTATGTTAGTATTAATTTTTTTGGCTCTTTCCTCCTTCCCCTCAG
Seq C2 exon
ATTTTGAGAACACTGAACCGAACATATGTTAACATGAAACAGAAGCCGGTTTGGAATGACTTAAACCCTAAAGCTGTGACAACAGATGAACTCTTTGGTTTCATACATCATGCTACCCGAGAATGGAAAGATGGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000105877-DNAH11:NM_003777:39
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF077289=AAA_5=PU(8.9=50.0)
A:
NA
C2:
PF077289=AAA_5=FE(30.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)