Special

MmuINT0050679 @ mm9

Intron Retention

Gene
ENSMUSG00000018581 | Dnahc11
Description
dynein, axonemal, heavy chain 11 [Source:MGI Symbol;Acc:MGI:1100864]
Coordinates
chr12:119279436-119282303:-
Coord C1 exon
chr12:119282226-119282303
Coord A exon
chr12:119279569-119282225
Coord C2 exon
chr12:119279436-119279568
Length
2657 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
3' ss Seq
TCTTGGCTTGCTTTTATCAGATT
3' ss Score
7.23
Exon sequences
Seq C1 exon
GTTGTCCAGCTTGAGGAGCTACTGGCCGTGCGACACTCTGTCTTTGTGGTTGGAAATGCAGGCACAGGAAAGAGTAAG
Seq A exon
GTAGGAGAACTCATGCTATACCTTTTAGCCTTGGAGGAATCTTTTCTGGAGGGCACAATTTTCAGTGTTGCTTAGGGGTCCCTTTGGTGAAGCCACAATAATGTTGAGCTAGGGTCTGAAATCTACAGCTGCCATTTGATCATGTGACACTGTTCCTTTCAGTGTCACATGATCAATGGAATGTGAAGGTGAAAAAGGTCATTGTTTGCATGCTCCATTTCATAGACATACACACACATACCACACCACATATGCACACCCTGCCACATACCACACCACACACACCACATATACACACACACTATACATACACAATACCACACGTATCATACACACACATACATACCATATCACATGGCATATCACACACACACACACATGCCACATACTATACCACACATAACACACATATCCATACACCACATATATACCACACATACACACACAACACAACACTACACATATCACACACACACCAGACTACTCACACACCCATACAGATCATACCACACTACATTGCATATCACATACCACACCATACACACATCACATACACACTACCCCACACCACATATCATACTATACCACACACCACACACACACACACACACACACCCATTCCACACACACTAAACCACATACCATACCATACCACACACACACACTACACCACATCACACCACACATACAAAAAACACCATGCCATACACACACACATATATATGTATGTGTGTGTGTATGTGTGTATATATATGTATATATATATATATATATATATATATATAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAATAATAGGCTCATCCAGAGACTAGACTTTCCACACAAGATAAGGAGAATTTGGCCAACATATTCAGGCTTGCATCTGCATGCTCACACCTGGCCTCTTTCACCAAGGGTGAGAGTGTTCAGAGTGAACGAGCCACCTGACTCGCAGGGTTTGATGAGCATTGCCCACCTTTATTAAAACTACTTTCTTGCCTCTTTGGGGCTGCCATAAAGTCTCCTTCCCATACTATTAAGAAAACAAGTGCAAATATTTTCCTTCATTACTCCTTTAGAGATTGAGCCTTCCTTGGCCTCAAAACAAAGCTTGAAAAGAAAAGAGATAGCAACACCCACATTTCTGAGGTCCCTATTGTGTGCTGGGCTGTGCATTGTATGGTTTTATCTGCTGTGATGGGAAGCTCTAGGTATTATTAAGCCCCATTTTTAGTTCACTGCTTGCTTCTTCTTGGCCTTCCTGACTGTCCTGGCAGCACTCTTATTTTCTTGGTTGGCAGACGGTATTTGCAGAGCTGTGTGCCTTCCCATTCAGGATGCTTGGGTATAAACACATTTGGTGGCCAACATCTAAAAATAATTGGAATGGCATATGAGTTCTGGAGCATGGCTGTGCACGGAACTTGCCAGTCCTCAGAGCTGAACCCAAAGGGAGACAATTGCCCAGGGAGGCTCTGTGTGGAGATCTTTTTTCTAGTGAAAAATGTAATCATTGCAATATTAAAGTAGATTACTGATAGACCTATAATTACTTTGTTAGTATAACTTTCAGATGTAGGCCATGGTTCATGGAAGGATAAAATTAAATTCTAAAATTTCTGGGAGATTAATGGTTTCCAAAAATATAAGCTGTATATTCCTGAGGTATTTCATTTCTTTCCTTTACTCTTCACCTAGTCAACATATGCTTAGGCTGATGTGAGCAGGACCATGTTATTTACACACTCACCACCGTAAAGTAGTTGGCACTTTTAAAGATCAGCCCTTTACAACTCCTAGGATTGGTGAGGATGATACAGATCAAAAACAACAACCTTGGCTTTCAAGGCAGAGTAAAGGACAACCAGGGCAGATATTTGGGTCAGTTAAGTAGATACATGCCTAATGAGTCCCAATTCTGATGATGTTGTCTTCCTCCAGCTTCTTTTGTTGAAGCTAGCCTCCAAGCTCCAGTGACACTATACACTGAGTATTTGCTTAGATGCACACCATCCAGGGTACTGACACATGTAAAGCAGATGCTAGATGCTAGATGCTCAGTAGCCACAGCTCTAGTTTCTCCAACTGAAGACCACATCTTGTGAAGGTTCAATCACTGCTGTGTCAGTGGATCTTGAAGACTGTCTAGGCAAGCATTGTCATCCTGGAGTCTTAGAAGTGCACACTACACTATGGGTCCTCCCTCTGCCTATTGAGTGAGAAGCTCTGGGAGGGCTTCAGCAGTCATGGTGACAGCCTCCAGGCAATTCTGAGTTGGGCTACAAAATACTAGCAGAGTGACCTCATACACAGGAATTCTTATACACTTTATACACTGTATGCATAGTTAAAGATCTCAAACTCACTCTGTACACAGTTAAAGATTTAACTGATAAAGCAGCTTTCTCCAGTCTGAATGCCTCTGGGAATCAGGTGAGCTGGTCCTGTCATCCTAAGCATCTGTGGCATTGAATGTTACAAGATGAGGAAACAGACAACTTTTTTTTTTTTTTCTGCTTTCTGCATCACTCTAGATACGGGATATCCAGGAGCACATGATAGGTTAGGAGAATTTATTTTCCACTGTTCATTTGGCCAACGTTACATTGTTTTCTTGGCTTGCTTTTATCAG
Seq C2 exon
ATTTTGAGAACACTGAACAGAACATATGTTAACATGAAACAGAAGCCTGTTTGGAGTGACTTAAACCCCAAGGCTGTGACAACAGATGAACTCTTTGGTTTCATACATCATGCTACCCGAGAATGGAAAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000018581-Dnahc11:NM_010060:39
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact





	

	
ORF disruption upon sequence inclusion





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.000 A=NA C2=0.000
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF077289=AAA_5=PU(9.5=50.0)

							
A:
NA

							
C2:
PF077289=AAA_5=FE(32.1=100)

						

					

				








    
Main Inclusion Isoform:
NA





     
                   









    
Main Skipping Isoform:
ENSMUSP00000081867





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
ENSMUSP00000081867f560A, ENSMUSP00000135748
  



Associated events






Other assemblies


mm10




Conservation


Human
(hg38)
chr7:21705538-21707698 
LOW PSI
HsaINT1011335
(DNAH11)
Human
(hg19)
chr7:21745156-21747316 
HsaINT0049323
(DNAH11)
Rat
(rn6)
chr6:145947180-145949758 
LOW PSI
RnoINT0048670
(Dnah11)
Cow
(bosTau6)
chr4:30576951-30579589 
LOW PSI
BtaINT0050265
(DNAH11)
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
No suggested primer sequences

				
R: 
No suggested primer sequences

				
Band lengths: 

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






Retrieved from "https://vastdb.crg.eu/wiki/Special:VastDB"