HsaINT1011335 @ hg38
Intron Retention
Gene
ENSG00000105877 | DNAH11
Description
dynein axonemal heavy chain 11 [Source:HGNC Symbol;Acc:HGNC:2942]
Coordinates
chr7:21705460-21707835:+
Coord C1 exon
chr7:21705460-21705537
Coord A exon
chr7:21705538-21707698
Coord C2 exon
chr7:21707699-21707835
Length
2161 bp
Sequences
Splice sites
5' ss Seq
AAGGTATAG
5' ss Score
7.98
3' ss Seq
TCTTTCCTCCTTCCCCTCAGATT
3' ss Score
11.96
Exon sequences
Seq C1 exon
GTTGTCCAGCTTGAGGAACTGTTGGCTGTGCGGCACTCGGTCTTTGTAGTTGGAAATGCAGGCACAGGAAAGAGTAAG
Seq A exon
GTATAGTAAATTGCCTAATAGCTTACAGCTATGGAAAGAACATTTGTTGTCATTGTGGTTCGGCCTATTTTCAATGCTACTCAAAAGAATTCCCCTCCATGAAGCCCACCATAATTTTGGGTCAGAATCTGAGACTGGAATCTTGCTGCTTGATCAATTGACATTCTTTTCCTTTATATTGGGTCAGCGGGGGGAGAACAAGAAACAAATAGAGGATTGCATTCACATAGGAAAAGCAAGCCAACATGAAGATTGAACTTTCCACGTGAGATGTTCAGTATCAGATGCAGGCATTTCGATATACACCATCCTACCTTATGCACCTTTCAATACATTTATGCTTGGATTCTTTTATCAAAGATAAACATATTAAGAGACTGTGGAATAAGATATCTGGCTGGAAGATTGGATTGGCTCTAGCCACATTTATCAAACCTATTTTCTTTTCCAAGTCATCCTTGATTCTCCTCCCCATATCATTCAGAAAAACAAACCGAAATATTTTCCTTCAGTACTCCCTCAGAAATATAACCCTCTATATGGCCAAACAAAACCTAAAAATAAAAGGAAGTGGCAAAACCCACATTTTTGATGTACCTATTATGTGCTGTGCTAGGTGCATTATGTATGATTTACTCGGCACAACAATGATATACTATGGGTATTATTATCCCCATTTTTAGTTCACTGCTTGATTTTGTTTGGTCTTACTGACAGTCCTGGAAACATACTTATTTTCTCGGTTGGCAGACGGTATATGCAGAACTGCATGCATTTTAATTCAGGATGCTTGGGTATAAACATACTTGGTAGCCAGCAGCTAAAAATAATCAGATTGAGCATATGAGATTTTAGAGGATGGCAGTATATGGAACTTGCCAGTATTTAGATCAGAACCCAAAGTGGAACAACTGTAAGAAAAAAAATCTCTGTATAGACATTTTTCTAGTGAAAAATATAATAAATGAAATATTAAAGTAGATAACTGATAGACCTGTAATTATTTTGTTAGAGTAAGTTACAGATGTAGGCCACAGTTCAAGGAAGGATAAAGTTAAATTCTATACTTTCCAGTGGATTAATGGTTTCTAAAAATATAAGCTTAATATTCCTAAGGCATTTACTTTCTTCTAGTCTTCACCAGTTCTGTTCTACTCAACAGGTACGTAACCCGAGATACCCGGAACACTGCAGCTCAGGGTGACGTTCTTTAGCATCTTATCATTTCAAAGTGTTTGCCAATTGTTTATCAGTTTTTCACAACCCTTGTGAGTAGGTCAGCATGATAAATATCTAAGACAAAAGCCACAGCTTTTCAAAGGAGCAAAAGGGAGAGTTAGGGCAGATATTTGAGTTAAAGTATTAATTAATTGAATAGACATACACTGAGCACCTGTTCTGTGAGTTCTCATTATCAAGGCTTTTCCTCAATTACCAGGATCAGGGTTTGTCAACCTCAGCACTGTTGACATTCTGGACTGGATAACTCTGCTGTAGGAGGCTATCCTGCTCATTGAAAGATATTTAGCAACCTCCCTGGTCTCTATCCACTGGATGTCCAGAAGCTCCTTCCCCCTTCTTCCCCCAAGTCAAGACAGTCTTTTCTTGAGAACCACTGCCCTAAGTCTCTAGGTCTCAAAGCATGGCCAGACCAGCATCATTGGCATTAGCTGGGCCCTTGTTGGAACTGTACATTACTGGCCCCACCTCAGACCTACTGAAATAGAAGCTCTGGGATTGGGCTCAGCAATCTGTATTTTAATACCCTCCAAACAGTTCTGTTGTAGGCTACATTTTGAGAAAAACCAATCTTGCTGATTCAGGCAGGGTAGATTTTGTAATCAACATAAATGCTTATTTATGTATGGTCCTCCACTTTGTACACATGATTAAAAATCTCAAGTGAGAAAGTGACTCCCTTTAGTCTAAATGGTTCAAAGAGTCAAGTGAACTGATTCTGTCTTGCTGAGTATTTGTAAGATGAAGCTTTTCAAGATGGTAATGGGAATGCACACATGTGCATTTTTCCCCTTCTCGATCTTAGCACACACACAGCATCTAGGAACATATAATGAATACGGAAAACTCTTCAGAAATCTTTTACTTTCCATTTGGCTTATGTTAGTATTAATTTTTTTGGCTCTTTCCTCCTTCCCCTCAG
Seq C2 exon
ATTTTGAGAACACTGAACCGAACATATGTTAACATGAAACAGAAGCCGGTTTGGAATGACTTAAACCCTAAAGCTGTGACAACAGATGAACTCTTTGGTTTCATACATCATGCTACCCGAGAATGGAAAGATGGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000105877:ENST00000409508:39
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.010 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF077289=AAA_5=PU(8.9=50.0)
A:
NA
C2:
PF077289=AAA_5=FE(30.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains