BtaINT0050308 @ bosTau6
Intron Retention
Gene
ENSBTAG00000013078 | DNAH11
Description
dynein, axonemal, heavy chain 11 [Source:HGNC Symbol;Acc:HGNC:2942]
Coordinates
chr4:30788497-30788874:+
Coord C1 exon
chr4:30788497-30788679
Coord A exon
chr4:30788680-30788758
Coord C2 exon
chr4:30788759-30788874
Length
79 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGT
5' ss Score
11
3' ss Seq
GTCGTCTTCTTCCCTGCCAGGGG
3' ss Score
9.22
Exon sequences
Seq C1 exon
GTTAAGCATGTCTTGGATGATATTTTGGAGAAACTTCCAGAAGAGTTCAACATGACAGAGATAATGCAAAAAAAAACAAACAGAAGCCCCTATGCCCTTGTTTGCTTCCAAGAATGTGAGAGGATGAACATTCTCCTTCGGGAAATCCGTGTGTCACTTCAACAACTGGAACTTGGATTGAAG
Seq A exon
GTAAGTTTAAAAGCGGAACTAGAGCAGGCTTCTCCACATGAAAACATATTTACTCTGCAGTCGTCTTCTTCCCTGCCAG
Seq C2 exon
GGGGAGCTGACACTGTCTCCTGACATGGAAGGCCAGCAGTCTGCCTTGAGTTTCGACACAGTACCAGAAACCTGGAGCAAACTGGCTTATCCATCCACGTACGGCCTGGCCCAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013078:ENSBTAT00000061103:78
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.016 A=NA C2=0.026
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(8.5=100)
A:
NA
C2:
PF0302810=Dynein_heavy=FE(5.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCTATGCCCTTGTTTGCTT
R:
GCCAGTTTGCTCCAGGTTTCT
Band lengths:
183-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]