DreINT0009181 @ danRer10
Intron Retention
Gene
ENSDARG00000094282 | DNAH11
Description
dynein, axonemal, heavy chain 11 [Source:HGNC Symbol;Acc:HGNC:2942]
Coordinates
chr16:19380188-19382880:-
Coord C1 exon
chr16:19382698-19382880
Coord A exon
chr16:19380304-19382697
Coord C2 exon
chr16:19380188-19380303
Length
2394 bp
Sequences
Splice sites
5' ss Seq
AAGGTACAT
5' ss Score
7.87
3' ss Seq
TCTCTGACGTGGTATTACAGGGT
3' ss Score
5.55
Exon sequences
Seq C1 exon
GTGAGGAGTGTTGTGGATGAGCTCCTGGAGAAGTTGCCTGAGGAGTATAATGTGGCAGAGCTGATGTCTAAAACAGCTCAGAGGAGCCCGTATGTCCTGGTTTGTCTGCAAGAGTGTGAACGCATGAATCTACTGCTGGAACACATACACACTTCATTAAAAGAGCTCCATCTGGCACTCAAG
Seq A exon
GTACATCACTGCAATAAACAATAAGCAATGTTCAATGAGTCAAGCCTTCATACTGTATTCATTTACGTTTTCCATCTAGGGGAATTTCTACATCTAGGGAGAAAAATATAATTCAAAAACAAATCACAAATAATGTACCATTACTATCACTTCATTCCCTGTGCTTGTAAACATGAATGATGTAATGTCATGCAATACAGTATTTTCTCTGTTTTTGGCATTTTATTCCACCACAGATCCATCGCTAAGGCTCAATTATTTCAATGCATCGACACCATAACTGAAATTTCTACATGTATAGAAATCTACAGGCTGTCAATATGGCACAAAAAAACTTCTGTGTGAATATAGTTGTACAAATAGTTGCCTACATTATTTTGGGTTAATTGTAATCAATTACATGCTGTACTTTTCTGTCAAAGTTATCAAGATAAATTTGACATATTTTATAATATTTTCTACACACACGTGTATATATTTTTTCTTGTGTATGTTGCAAATGTATATTTTTGATAATACTGCTTGCAAAAAATGTTTTTATGTTTACATTACAGTTTGTATTTGGACTTAGGGGCAATAAATTATGATTATTATGTTAAATGAATACATTACCGGGCGAAACGGTGGCGCAGTAGGTAGTGCTGTCGCCTCACAGCAAGAAGGTTGCTGGTTCGAACCTCGGCTCAGTTCTCCCTGCCTTCGTGTGGGTTTCCTCCGGGTGCTCCGGTTTCCCCCACAGTCCAAAGACATTAGGTACAGGTGAATTGGGTAGGCTAAATTGTCTGTAGTGTATGAGTGTGTGTGTGAATGTGTGTGTGGATGTTTCCCAGAGATGGGTTGCGGCTGGAAGGGCATCCGCTGCGTAAAAATTGCTGGATAAGTTGGCGGTTCATTCCGCTGTGGCGACCCCGGATTAATAAAGGGACTAAGCAGACAAGAAAATGAATGATGATCAATACATTACCAGTAGTTGAAAGAGTACTGAAAATCATACTTAAGTAAAAGTACCATTACTTGCCTAAAAATGTAGTAGAGTAAAAGTGTCTGTTGTAAATATTACTCAGAGTATGAGTTAAAAGTAGACCTTTCAAAAGTACTCAAGAGTAGTGAGTAGTGAGTACTACATTGTGAAAAGCTGATGCATTTACATGTAATTTGTGGATGTCTGTAAAAGTAACATTCTGTAGCGCATTTAGTTATTGCCAAACAGTCACACACTATCATAGGACATTAATATTAGGTTAGATTTAGGTTGTGACATCAGGTGACCAAACTTCAATTTCTAGTCAGCGTCTCAGGACAACGCTATTGTGACATCCGACAATGACTTGAAATGTAGTTGATTTGGTTGATTTTAGGTTGTGTTGGAAAGTGATCAAAATCCAACATCGAGCCAAAATCTTAAACCAATGTCATATTAACGTCAAATACTGACATTTCTTTGTCTGCGACTGTATGACGACCAAAATCCAATGTCTGATACCAACATAGTGGTAACGTCCACACATCGTCAAGCTGTAACATCAGTCAACATTGATATTTAATTGATTTTAGGTTTGACATTGGACATTGATTTCAACCTGACATTGGGTTCAGGCATTAACCTGATTTTCATTTCCAAACAAAATGCAACAACCCCACAACGTTGGGATACAATATCAATCTGACGTCATATTGAGGTCTTGTACCTGTCAGGTGTTTAAGACCATTTCGGTCATCGTACAGTAATCATTTGTCATGTTCTCATCAGTGACATGCATCTAAATAGTCTCTGAGTCAATGCATGTAAAGATTTTGGACATGTGTTTTTGGACACTTTAACTTTTTCCAAACAATTTGCTACAATTATAAATCGCTCATGTCTTGTTCATTATGATATGATTTACCTTCTATATGTGATTTGATTGGACAGGAATCACAGGACTGATTTAGTGAAGTAAAAGTACAGATGCTGCTCTAAAACTGTACTCAAGGGAAAGTAAAAGTACACATTTTTAAGACAACAAATTACAATTTCTGAGAAAAAACTAGTCAATTACAGTAGGTTGAGTATTTGTAATTTGTTATTTTACACCACTGTACATTACACGTTTTATTTAAATTGTATCTTTTTATAGCACATGTATAATGTTATAAGCAATATACAGCATACATATATAATAAAACGTAATTAGTAAGTAATTACAAATTATTTTTTCATGAATACCACATTGACATCTCAAACATTCCTAAAACATTCCTAATGCATTTCAAGGAATATTGTTTTATTAATGTATGTCTATTGTTTGTGCATGAAAACTTAAAAAAAAAAAAAATTCTGCTCACCATGTTATACATGCACATATAGCTTAATAAGTGTCAACTGAATATATGTTCTCTGACGTGGTATTACAG
Seq C2 exon
GGTGAACTGAGTCTTTCTTCAGACATGGAGCTCCTCCAAACAGCTTTGTTCTATGATGTTGTTCCTGAGAGTTGGAGCAGGCTGACCTTTCCTTCAACTAAAACCCTGCCTCAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000094282:ENSDART00000138744:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(8.5=100)
A:
NA
C2:
PF0302810=Dynein_heavy=FE(5.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]