RnoINT0048713 @ rn6
Intron Retention
Gene
ENSRNOG00000005451 | Dnah11
Description
dynein, axonemal, heavy chain 11 [Source:RGD Symbol;Acc:621088]
Coordinates
chr6:145790035-145790413:-
Coord C1 exon
chr6:145790231-145790413
Coord A exon
chr6:145790151-145790230
Coord C2 exon
chr6:145790035-145790150
Length
80 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGAC
5' ss Score
7.07
3' ss Seq
GGCCTTTTTCTCTGTGCAAGGGA
3' ss Score
4.8
Exon sequences
Seq C1 exon
GTTAAGAATATCTTGGACGACATTTTGGAGAGACTTCCAGAAGAGTTCAACATGGCGGAGATAATGCAAAAGAACCCAAATAGAAGCCCGTATATTCTCGTTTGCTTTCAAGAGTGTGAGAGGATGAACGTTCTCCTCCGGGAAATCCGTGTGTCGCTTCAACACTTAGACCTTGGTTTGAAG
Seq A exon
GTAGACTTACAAGTGGGACAAGGGAGGAGCCTCACCATACTGGAGGAGGGTATTCACGGTGGCCTTTTTCTCTGTGCAAG
Seq C2 exon
GGAGAGTTAACATTGTCTCCTGATGTGGAAACCCAGCTGTCCGCCTTGAGTTATGACCGGGTCCCAGACACATGGAACAAACTGGCTTATCCATCTACTTACGGCCTGGCCCAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005451:ENSRNOT00000007233:85
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.033 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(8.5=100)
A:
NA
C2:
PF0302810=Dynein_heavy=FE(5.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAACGTTCTCCTCCGGGAA
R:
GCCAGGCCGTAAGTAGATGGA
Band lengths:
170-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]