BtaINT0050352 @ bosTau6
Intron Retention
Gene
ENSBTAG00000000920 | DNAH17
Description
dynein, axonemal, heavy chain 17 [Source:HGNC Symbol;Acc:HGNC:2946]
Coordinates
chr19:54358310-54359244:+
Coord C1 exon
chr19:54358310-54358467
Coord A exon
chr19:54358468-54359105
Coord C2 exon
chr19:54359106-54359244
Length
638 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGC
5' ss Score
6.46
3' ss Seq
GACCCCCCCGGACCCCTCAGGCC
3' ss Score
5.83
Exon sequences
Seq C1 exon
GTAAAATGTGTCCAAGATGCAATTCGGGCCAAGAAGAAAACGTTTAATTTCCTGGGAGAGATGATAAGCCTCATCCCCACCGTCGGCATCTTCATCACCATGAACCCGGGGTATGCCGGGCGCACGGAGCTGCCAGAGAACTTAAAGGCCTTGTTCAG
Seq A exon
GTGTGCGGCGGGGGCAAGGCCCAGGAGAGCGGCTGTGGAGGGCTGGGTCAACCCAGAGGGGGCTAGGGGAGGCAGGGATGGGAAACAAGGCCTGGGTGAGAGGGGCAACCTGGCCAGGACCTCTGTAAGGAGCAGACGGTGTCTTCCCACTCTCTGACTCCCAGGGGGTGGAGAGGAAGGTCCCATTTTAGGCATAAGCTGCCCACGGGTCAGGAAGATCCCCTGGAGAAGGAAATGGCAACCCACTCCCATATTTTTGCCCGGGAAATCCTATGGACTTTGGAGCCTGATGGGCTACAGTCGTGGGGTCACAAAGAGTCGGACACGACTGAGAGACTGAGCATGCACACAGCCAATCGGTACAAGGTGGTGGGCAGAGGCAGCGCTGAGGTGACTCTCAGAGGATTTGAGTAAAGGGGGGCAGGGCCCGGAGATACCCCTGTGCAGAGCAAGGGGGCAACAGTGAAGACAGGAGGGGAGCCGAGGGGAGGGGAGGGGGTCTGGGAAGCTGCTCTGCACCTAGAGTCTCTGCCAGTAAGGCTGTGGTCCTCCTGGAAGGTGGTGAGCTCATGAGGGGCAGGTGGGGGCAGGCATGGAGGAGGGGGAGAAGCCAAGACAGACCCCCCCGGACCCCTCAG
Seq C2 exon
GCCCTGTGCCATGGTGGTTCCCGACTTTGAACTGATATGCGAGATCATGCTGGTGGCCGAGGGCTTTCTGGAAGCCCGCCTTCTGGCCAGGAAGTTCATCACACTCTACACCTTGTGCAAAGAGCTGCTGTCAAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000920:ENSBTAT00000022637:37
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=FE(22.5=100)
A:
NA
C2:
PF127742=AAA_6=FE(19.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTAAAATGTGTCCAAGATGCAATTCG
R:
CTTTGACAGCAGCTCTTTGCAC
Band lengths:
294-932
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development