GgaINT0129597 @ galGal3
Intron Retention
Gene
ENSGALG00000007106 | DNAH17
Description
NA
Coordinates
chr18:9753072-9753697:+
Coord C1 exon
chr18:9753072-9753229
Coord A exon
chr18:9753230-9753558
Coord C2 exon
chr18:9753559-9753697
Length
329 bp
Sequences
Splice sites
5' ss Seq
CAGGTACGG
5' ss Score
10.88
3' ss Seq
AACCTTCTCTGCTTCCCCAGACC
3' ss Score
9.17
Exon sequences
Seq C1 exon
GTGAAATGTGTTCAGGATGCAATTCGTGCTAAAAAGAAAACGTTCAATTTTCTCGGAGAGACGATATCGCTGGTGCCATCGGTCGGGCTGTTCATCACGATGAACCCTGGCTATGCAGGACGGACAGAACTGCCCGAAAACTTAAAGGCTCTGTTCAG
Seq A exon
GTACGGGCAGGCAGATGGGTCACCATTAACGTGGCACAGCTGTGACATGAACTGAAGCCATTGCTCATGTACACGAGGACACCCGTGCGTGCTGGTGGCTCTGCTGTAAGAGACCCCCGGAGCACTCAGCTCAGAGCTGTGGGGCTGCTCAGTACAGGAGGGTGCTCAGAGCACCTGGCTGTGTAATGCGGGCCGGCGGGGGGCTGCATGAGGTTGCCACCTGTTTCTCATTCTAACAGCAGCAGTGCATGATCTGAATGAAAAAACGGTGCAAATCTTGATGGCTTGTGGCTGTGTATGCACCCTGCTAACCTTCTCTGCTTCCCCAG
Seq C2 exon
ACCCTGTGCCATGGTGGTTCCGGACTTTGAGCTCATCTGTGAGATCATGCTCGTTGCAGAAGGCTTTATTGATGCCAAGCTCCTAGCAAGGAAGTTCATTACTTTGTACACACTCTGCAAGGAGCTGCTGTCCAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007106:ENSGALT00000011513:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=FE(22.5=100)
A:
NA
C2:
PF127742=AAA_6=FE(19.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGTTCAGGATGCAATTCGTG
R:
CTTGGACAGCAGCTCCTTGC
Band lengths:
288-617
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]