MmuINT0050758 @ mm9
Intron Retention
Gene
ENSMUSG00000033987 | Dnahc17
Description
dynein, axonemal, heavy chain 17 [Source:MGI Symbol;Acc:MGI:1917176]
Coordinates
chr11:117943615-117944296:-
Coord C1 exon
chr11:117944139-117944296
Coord A exon
chr11:117943754-117944138
Coord C2 exon
chr11:117943615-117943753
Length
385 bp
Sequences
Splice sites
5' ss Seq
CAGGTGACA
5' ss Score
5.49
3' ss Seq
GCTGCTCGGTCACCTCTCAGGCC
3' ss Score
6.02
Exon sequences
Seq C1 exon
GTAAAGTGTGTCCAAGATGCAATTCGGGCCAAGAAAAAGAAGTTTAACTTCCTGGGAGAGATAATAAGCCTTGTCCCCACCGTGGGCATCTTTATCACCATGAATCCTGGCTACGCAGGGCGCACGGAGCTGCCGGAGAACTTGAAGGCCCTATTCAG
Seq A exon
GTGACAGAGGAGGGATCCGGCAGTGTCCCAGGCTGAGGAGTTAGTGGAGGAGGTGGAAGACCCCAAGGCTAGCAGCTCCCAAGATGGAGTAGGGGTAACAGGACAGCAGGCAGGTCCTGGGGCTCCCCAAGTGGGGGAGGGGGGCGCGGTCCACAGCCGAGACACTGGCTATTCTGCTTAAGGAGTCTCAGAGGAGTCGGAGCAGGCGTGGGGCCTGGAGCTTCCTGAGCTGGGTGTGTGGATGGATGGGGGAGGCTGGAACCCGGCTTCATGTACCCTGAAGGTTGACTGGCAGGGACACGTGGCCCAGGGGAAGAGGGGCGGCTGGCTGATGAGGAGCCAGGGAGGTGAAAGCGGGAGAGACAGCTGCTCGGTCACCTCTCAG
Seq C2 exon
GCCCTGTGCCATGGTGGTCCCTGACTTCGAGTTGATTTGTGAGATCATGCTTGTGGCCGAGGGCTTCCTGGATGCTCGCCTCCTGGCCCGGAAGTTCATCACCCTCTACACCCTGTGCAAAGAGCTGCTCTCTAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033987-Dnahc17:NM_001167746:38
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=FE(22.5=100)
A:
NA
C2:
PF127742=AAA_6=FE(19.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGTGTCCAAGATGCAATTCG
R:
GAGAGCAGCTCTTTGCACAGG
Band lengths:
286-671
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: