BtaINT0050353 @ bosTau6
Intron Retention
Gene
ENSBTAG00000000920 | DNAH17
Description
dynein, axonemal, heavy chain 17 [Source:HGNC Symbol;Acc:HGNC:2946]
Coordinates
chr19:54359106-54359628:+
Coord C1 exon
chr19:54359106-54359244
Coord A exon
chr19:54359245-54359400
Coord C2 exon
chr19:54359401-54359628
Length
156 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
3' ss Seq
ACCCGCCCGCCCACCCGCAGGAT
3' ss Score
10.09
Exon sequences
Seq C1 exon
GCCCTGTGCCATGGTGGTTCCCGACTTTGAACTGATATGCGAGATCATGCTGGTGGCCGAGGGCTTTCTGGAAGCCCGCCTTCTGGCCAGGAAGTTCATCACACTCTACACCTTGTGCAAAGAGCTGCTGTCAAAGCAG
Seq A exon
GTGTGTGACTGTCTGGGGGCCCACGGAGCCAGGGGCGGGAGGGATGACAAATGCACCCGGCCTGGGCTGCCTCCCAGACGGCCTGGCGAAGCCCCCCAGCCTCGGTCCCGGCACATCAGGTGGCACGCTCATGCCCACCCGCCCGCCCACCCGCAG
Seq C2 exon
GATCACTATGACTGGGGCCTGCGAGCCATCAAGTCTGTGCTGGTGGTGGCCGGCTCCCTGAAGAGGGGCGACCCCAGCCGGGCAGAGGACCAGGTGCTGATGCGGGCGCTCAGGGACTTCAATATCCCCAAGATCGTCACCGACGACCTGCCCGTGTTCATGGGGCTCATCGGGGACCTCTTCCCCGCCCTGGATGTGCCTCGGAAACGGGACCTGAATTTTGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000920:ENSBTAT00000022637:38
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=FE(19.9=100)
A:
NA
C2:
PF127742=AAA_6=PD(10.4=31.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGCAAAGAGCTGCTGTCAA
R:
AATTCAGGTCCCGTTTCCGAG
Band lengths:
246-402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development