DreINT0058311 @ danRer10
Intron Retention
Gene
ENSDARG00000062630 | dnah9l
Description
dynein, axonemal, heavy polypeptide 9 like [Source:ZFIN;Acc:ZDB-GENE-050506-1]
Coordinates
chr6:10418454-10418760:-
Coord C1 exon
chr6:10418622-10418760
Coord A exon
chr6:10418547-10418621
Coord C2 exon
chr6:10418454-10418546
Length
75 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAT
5' ss Score
7.79
3' ss Seq
AACCTTGTGGTTTCTTGTAGGAT
3' ss Score
9.26
Exon sequences
Seq C1 exon
GCCATGTGCAATGGTGATTCCAGATTATGAGTTAATCTGTGAAATCTTGTTGGTGGCGGAAGGTTTTCTCGATGCACGGCTGCTTGCACGCAAGTTCATCAGCCTGTATACACTATGCAAAGAGCTGCTGTCCAAACAG
Seq A exon
GTACATTGACTCACATACGCATTCATACATAAACACGCTTCGTGATCTGTTGAAAAACCTTGTGGTTTCTTGTAG
Seq C2 exon
GATCATTATGACTGGGGCTTGAGGGCCATAAAGTCAGTCTTGGTTGTAGCTGGGTCACTGAAGAGGGAAGACAGGAGCTGTCCGGAAGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062630:ENSDART00000150908:29
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=FE(19.9=100)
A:
NA
C2:
PF127742=AAA_6=PD(10.4=77.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGCGGAAGGTTTTCTCGAT
R:
ACAGCTCCTGTCTTCCCTCTT
Band lengths:
168-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]