BtaINT0050262 @ bosTau6
Intron Retention
Gene
ENSBTAG00000013078 | DNAH11
Description
dynein, axonemal, heavy chain 11 [Source:HGNC Symbol;Acc:HGNC:2942]
Coordinates
chr4:30569443-30574583:+
Coord C1 exon
chr4:30569443-30569581
Coord A exon
chr4:30569582-30574490
Coord C2 exon
chr4:30574491-30574583
Length
4909 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
TATCTGTGTTTTGATTTTAGGAT
3' ss Score
10.96
Exon sequences
Seq C1 exon
ACCCTGTGCCATGGTGGCCCCAGACATCGAGCTAATCTGTGAAATCCTGTTAGTTGCTGAGGGTTTTGTGGATGCACGCTCATTAGCCTGCAAATTTATCACATTGTACACACTCTGCCAGGAGCTCCTGTCCAAGCAG
Seq A exon
GTGAGGGTCTTTTGTTGCTTTTTCCCGGTTGTTACACCCCATTAAAACAACTTCTGAAGTATGGATGCTGGGTAATTTATCACTGATATTACAGTTAGACATTTAAGAATAATTTTATATTTTCCCTTAAATTTTGAAAATCTATGCTTTACAGTTCTTCATTTAAAAAAAATTAAACACATGAGACAAATTTGAGTTTTATCAATGGGCTTTTATCAATGGGCTTTTTGTGTTATCAAAGTTTTATCAACACAAAAAACAAATGTGATTGTTTTTAAATGTAATCAGTGCTATAATTAGATATGAGTTTTATGATGCCTCTCTTTCTTGGTGGGAATGATATTGTCCAGGCAAAGATGGTGGGAGTGTTCATAAGACCCAGGGAAAGCTGATTTTCTGAAGAACCCTCAAGAAATGTTAGAGTTTCTCATTTTGTTGGTTGTTCTTTCTTTGAAGGTAGAGTTGTTTTTTTGTGTTTATTTTTGCTCTGCAATTCCCTAGTCTCTGAAATGGGCCAAATTAATGTATACTTTATTCTCCAGTCAGTAGCTTCTTGCTGTTTCATTGAATCTGCTGATGGGTTTAAAAAAATGGCATCTATATGAGCATCACCATTTTTAAATTTAGCTTTGTGGTCACCTTTAACTTCAGTCTTTTGGTGACCTTTTGTTAATTCCTAGTGACGTTATTTTGCAGGTTTTTCAGGGTATAAGTATTAAGTATTAAAATATTTAATATATTAAAATATTAATATATTAAAAAGTATTAAAATATCACAGTTACAGCCATACACTTACTTATACTGTCAGATACACTCATGTAAAATTACCCATTGTTGGGATGAAATTTAAAATCTGAGAGGCAAATGCGTGTGGAAAATGTTGATGACAGTGTTATATGAAGTGAAGTAGTATACCAAACTGTAGATGTGATCTATAACTCGAGTGTGTTTTATAAGTTATATTGTGTGTTTTATGTATAAAGTGACTGGAAAATACATTGTGACTTTTAACATTTCTTTCTGGGTAATAAGATTGTATTTTAGAATTTTTCCTTATTGTTTGTAATGATATATGTATTTTTTTCAATGAAACCATTTTAGTTTTATAATGGAAAAGCATCAGAAGAAAGCAGTGTTACTGGATCCAGGATACATGTAGTCACAATCATACTGCATTCCCAGTACCATACTTAAACATTTAGTGAGCATTTACTGTACTCAGGTAATGAATTTATTGCTGCTGCTGATGGAGGTAAACACAGAACAAATGAAACACTCAGATTTCTGTCTTAAAAAGATCTATTTAGGAGATTTAGTACACATGACATGAAATTTAGAAAGAAATGGAGGATGAAAAAAACGTATCATAGTTTCAAGAAAAAAGGAACCAGTATTTACAGAACAGGGACCATGTGTTATCTTTATTATCTTGATGAAAACACTATGAGCTTCAGATGAGGAAACTGAGTCAATTCCCTATCTGAAGCTCATGAGTAGTAAGTGGTGGGAACATGATTTGAATTCAGTCCTTTCTATTCCTTTCTAGGACACCAGCAGCCAGTTACAGGAGGAAGATGCTGGGAGTAAAGGCAGAACAGGCAAGGAAAGAGTTTTCCAACTCAGAGAAGCCTCAGGGAGGAAATGAGGGGGAAGAGAAGCCTCAGGGAGGAAATGAGGGGGAAGAAATTCATCCAGGACAGAAAAGCTGAGTTAGGGACACAGTCCTGATAGTTTTCTAAGCTGTAGGAATGAATTTTAGAAACATCAGTGGACATTTTTGACCAAAGGAATAACATAATGAAAATGGTGAAAATTATTTTAACACTTGTTTGCACTGTTTAAATGTTTAGGCGTTTCATCAAGTCGCCTTTAAAAAAAAAATTGAAATATAGTTGATTTACAGTGTTGAGTTACTGCTGTACAGAAGTGATTCAGTTATACAGACAAGCACACACACGTGTATATGTAATCTTTTTCATATTTTTTCCATTATAGGTTATTAAAGGATGTTGATTATAGTTGTCTGTACTACAGTAGGACTTTGTTGCTTATCTGTTTGATATGTAGTAATTTGTGTCTGCTAATCTCAACTCCTAATTTACACTTCCCCCTCCACCCCTTTCCCTTTGGTAACTGTAGGTTTGTTTTCTATGTCTGTGAGTCTGTTTCTGCTTTATAAATAAGTTTGTTTGTGTCATATTTTAGATTCAACAGGTAAATGACATCCTGTGAGATTTGTTTTTCTTTGAGTTACTTCACTTAGTATGATAATCTCTAAGACCATACATGTTGCTGCAAATGGCATTATTTCATTATTTTTTATGGCTGAAGTATTCCATTATATAAATGTATGTACACATCTTCTTTATCCACTCTTCTGTCAGTGGATAGTCAGTCTGCTTCCTGTATTTGTTATTGTAAATAGTACTGCTGTCAAGTACTAGTATCTTTCTATCTTTCATACATTCTCTTCTTTAATAGTTTTACTGCAGTGAGTTACCCCCTCCCCAATCTCTTGTGGCCTCCAAATGTTGGCTCTTCCCCCTTCCTTCCCTCCCCAAGCCCTAGTTCTTTCTATATCAGTGGCTTTGAAATGATTTTTGCTGTGACCCACAGTAAGACATACTTTTTTCTGTGGAGACTCAGTATACACATATGCGCATACACACACGCACCCAGATAACAACCGAAAGAGAAATCTTCACCAAGCACTTCGTACCGTTACTGTTTGCAGTGCACTGTGGTATTTTCCATTGCATTATTTTCTATTTTAATACCAACAAAAATGATGGTTAAGACCCACTACAACGATTTTATTATCTACTAATGGATTGAAGGGCATGTTTATACTTACATGTGTTGCTCCACTGCTCACAAGGCAATGACTGGTTTACTTCCAACAACCTTGTAACGTGGGTGAATACTTCCATCTGCCTTTTCATAGATGATGATAGTAAGACTTGGAAAGTTAAATGACTTTACCTCAGGCATAGCCAGGAGACATTAGAGAGAAGGGCTGTTTCTGTGTGGTTGTAGATAGAAGGCCGTTTATACACAACCTCTCAGTTGATGCAGAATGTCTTCCCTGAGGCCCCTGCTCTGTGCAGTGCACCACGCTAGGGCCTAGAAGGCAAAAAATCAACACGGGGTCTGTGCTCCAGGAGCTCGGAGCCTGTGAAGAAATCTTGGGCAGAGACAATGTAAAAGTTTCAAAGAGGTATCAGTTTAATCATTGAACGTATTTTAAAAATATTTTATTGGGGTAAAGTTGGTTTACAATGTTGTGTTGATTTCAGGTGTACAGCAAAATGAATCTGTTATATCCACTCCTTTTTAGATTCTTTTCCCATATATTGTGTAGAGTATTGTGTAGAGTTCTCTGGGCTGTACAGTAGGTCCTTATTAGTTATCTGTTTTATATACAGTAGTGTATATGTCTATCTCAGTCTCCCAATTTATCCCTCCTCCCCTCTTTACCTGCAGGTAACATTATATAACTTATATGTGGAATCTAAAAAAGGGTTCAAATGAACTTATCTACAAAATAGAAATAAAGTTACAGATATAGAAAACAAACTTAGAGCTACCAGGGGGTAAGGTGGCCGGATGGATAAATTGGAAGACTGGGATTGACATATATATGCTGCTACTGCTAAGTCACTTCAGTCGTGTCCAACTCTGTGCAACCCCATAGATGGCAGCCCACCAGGTTCTGCCGTCCCTGGGATTCTCCAGGCAAGAACACTGGAGTGGGTTGCCATTTCCTTCTCCAGTGCATGAAAGTGAAAAGTAAAAGTGAAGTCGCTCAGTCATGTCTGACTCTTCGAGACCCCATGGACTGAAGCCTACCAGGCTCCTCTGTCCATGGGATTTTCCAGGCAAGAGTCCTGGAGTGGGTTGCCATTGCCTTCTCCATATATATGCTGCTGCTGCTGCTGCTGAGTCACTTCAGTCGTGTCCGACTCTGTGCGACCCCATAGACAGCAGCCCACCAGGCTCCCCCGTCCCTGGGATTCTCCAGGCAAAAACACTGGAGTGGGTTGCCATTTCCTTCTCCAATATATATATGCTACTACATATAAAATAGGTACTGCATATAAAATAGGTAACTAATAAGGACCTGCTGTGTGTTGTTGTTGTTTAATTGCTGAGTCATGTCCAACTCTTTGTGATCCCATGGAGAGTAGCTCGCCAGGCTCCTCTGTCCATGGGATTTTCCACTGGAGTGAGTCACCATTTCCTTCTCCAGAGGATCTTCCCCACACAGGGATCAAACCTGAGTCTTCTGCACTGCAGGCAGATTCTTTACCACTGAGCCACCGAATAAGTACACACAGGAAACTCTACTCAATACTCTGTAATGATCTATATGGGAAAATAATCTTAAAAAGAGTAGATACATGTATATGTGTAATTAAGTCATTCTGTTGTATGCTTGAAACTAACACAACATTGTAAATCAACTGTACTCCAATAAAATTTTTTTGTAGAGAGAGAGTAATGAGGGAGATTAGCGATCCAGGGCCAGGAGGAGATAGAATAGCAGGGCTCCAGGTGGACAAGAGGAGTGTGCTTGTGGTTGGAGGTAAAACATGGGAGTAATTGTACCCCTGAGTTGGCAAGTTTATTGAGAGAACAGAGGGAGGCAGGTAGGTGGAGCCTTGGGCGAATACTGCAGCTAAACACCATGGAAAGAAGAGATTTGCTGACAGAGGCAGAGAATCGGGCAAAAGAAGCCGGACAGTGAAGGGACATGATTTTTTAAATTTCAAGGAGGGGATAAAAATATTACTTTACATTGTCAAGACACGTGTTTAAGTGAATTCTTTTAGGCTTAAGCTCTTCTGGAATGGAAATCTGAGTCCCTCATAAAATTTTTGAAAGAATGTATCTGTGTTTTGATTTTAG
Seq C2 exon
GATCATTATGATTGGGGACTCCGTGCTATTAAATCTGTCTTGGTTGTAGCTGGCTCCCTGAAACGAGGAGATAAAAATAGACCTGAAGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013078:ENSBTAT00000061103:36
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=FE(19.9=100)
A:
NA
C2:
PF127742=AAA_6=PD(10.4=77.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]