RnoINT0048667 @ rn6
Intron Retention
Gene
ENSRNOG00000005451 | Dnah11
Description
dynein, axonemal, heavy chain 11 [Source:RGD Symbol;Acc:621088]
Coordinates
chr6:145953279-145962148:-
Coord C1 exon
chr6:145962010-145962148
Coord A exon
chr6:145953372-145962009
Coord C2 exon
chr6:145953279-145953371
Length
8638 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
GCCTGTGCTTTTATTTTTAGGAT
3' ss Score
11.83
Exon sequences
Seq C1 exon
ACCCTGTGCCATGGTGGCCCCTGATACTGAGCTGATCTGTGAAATCATGTTGGTGGCAGAAGGGTTTGTGGATGCGCGGTCATTGGCCCGGAAGTTCATTTCCTTGTACACGCTCTGTGACGAACTGCTGTCCAAGCAG
Seq A exon
GTGAGAAGTCTTTCGTTATTATTTGGTTTTATATCACATTAAAATAGATGTCTTAAAATGTGGATGTTGAATAATTTAACACTCAAATGACACAGGCATTTGGAAGGGTTTCATATTTTCTATGGGATTTTCAAATTTCGTGCTTTCTAAATCTTACTTTTTCCTGAAATTAAAATTTCAGACATCTTAGTGTGCTTATGAAGTATCTTCCCTATATTCCATATGGCTTTTTATCAATGAGTTACGGGATTTTTCTCTAAAGCATCAATGATGCTATGGTTATAAAGGCGATTTCATGTTGCCTTTATTTCTTGTAGTGGAAAAGGCAGAAGGGGTCATAGGTAAGTGAAGTTGATTCTGGGAAAGAGTCTAGAAATGTTGGCTTTTCTCATCCATTGCTGATCCCTTATTTGAAGCTGTGTGGGGCTTTGTTTATTAATCCTAGTCCCCAGAATGGGTGACACTTAACATTCTTTCTCCTTCTTACTGTGCTTTTGAAAGTTTGTGAAGTTACTGATGCACCACGCACAAGTGTGTGTTTGCTGCAGTCTTCTCAAATTTAGCTTCCTGTTGGGCTTTGGACGTTTTGTGACGTCTCATTAATTCCCTATGACATTAGTCTGTAGCTATCATATAGTGTGGCTGTTAACCCACAGATATGTTTGATCCGGTGCATTTATCTTAACTTGACCAATGTCAGAGAGCGATATGGAACCTAAGAGATAAGGACATCCTGTCATTTCAAGGGTAGGCATTTGGGAAGGAAGCTGTAATGTTTAATAACACAGGGAACTACTCTTCTCGTGTGCAAAAGCAGCCTCATTGTGTATGACCTCAGCTGTCAATGTGTTTTCTGCACACAAAATGACTGGAAACATAGTTTTTGATGGTCGTCTTTGCAGAGTAAGATCATTGGTATTTTTATTTTCTTTTATAATCTGAAATCTCCTTTAAAATTTCATTTAAGTCTTATAATTAAAAAGTCTACTTCCCGTGAAAAATGAAATTGTGAGCATGTCTGACACAATGGTAATATGCGGACATCTAGTGAGGCCATCTACTGTAGCCAAGTGATATGTTTGTTGACGTCAGTGACAGAGTGTAAGAAACAAACCAGATGAAACAGGCAGTCCATTTTACCGTGAAGATCTTGGAGGTTCAATTGCATGAAGTAAAAATTGGAAGAAAGTAGAAAAGGAAAAGATCATCAGAGTTCTCAAGGAGGGAAGAGACCTGTGTTTTTTATAGACTAGGTAGCATTTATTTTCTGTTTTGGTTTGAGATAATGTCTTACCCTACCTCATGGTAGCTGCAAACTCCTGGAAATCCTCCTTCCTTAGTTTCCTGAATACTGGGATTATCGGGATGAATATTGGTTTTAAGTGCTGCCTCACCTAGCTAACCATGCTGCTGTGTTTTAAAATCATTCGTCAGTGGGTGATGAGAGAATGACACCCAACGCTGCCTGGGTGCGAGGTTGGTGGGCACCGGTTCCTGGAGGCTGCAGAGCGGAAAGATCGACCACAACACTGCTCACTCCTGCCTCACTCCTGGCCATCTCTAGCAGGAAACTGTATACCGCAGGCCTCTGGGCTGCCGCGTGGGGGAGGCGCCAAGGACGCGGCGCGGACACCTGCCTGAACACCCGCCGGAACCTGAAAGAAACAGAGGGCGCGGGATAAACGAGGTTTCTCGTGTTTGGTACCCGGGCAAGAGGCTGTGGGGGAGAGCTAAAACCTTCAGGACGAGCACGCACAAGGCCTGGAAATCAGAAAGAAGACTGCTCCCCTGCACAGCAGGCATCTCGGACTTGCAGAAGAGAACGAAGCCAAAGAACGCATCGCGAACCGCTGCGGTGCACTGAACGGCTGCCCGGACAGGCTGGCACAGGCCTGGTTCCTGGTTGCCTGGCAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAAAGAGAAACAAGCCGAGAAAGATAAATTAGGGAAACGACACCCTTCATAATAGACCCAAATTAATATAAAAGTTACCTCGGTGTTGACTTTAACAAGCAAGAAAAGATCGTGTACCAATAAGAACTCAACGACACTGAGGAAAGAATCTGAAGAAGACCTCAAAGATGGAAAGATCTCCCATGCTCATGGATTGGCAGGATTAATATAGTAAAAATGGCCATTTTACCCAAAAGCAAGTCTACAGATTCAATGCAATTCCCCATCAAATACCATAGTCCAATTCTCTCAAAGAGTTAGACAGAACGGAATTTGCAAATTCATCTGGAATAAACAAAAAACCCAGGATAGCTAAAAGCTATCCTCACAATAAGGACTTCAGGGGAAATCACATATTCCCTGAACTCAAGGCACGTATTTACAGAAGAATAGTGATAAAAACTGCATGGTATTGGTTACAGAGGGACAGACAGATAGACCAATGGAATAGAATTGAAGACCCAGAATTAACACACACCTATGTCACTTGATTTTGACAAAGCGAGCCAAAACCATCCAATGGAAAAAAGATAAGCATTTTCAGCAAATGGTGGCTGGTTCAACTGGGATGAGAACATGTAGAGAATGCAGATCGATCCATGCTTATCACCCCCCGTACAAGCTTAAAGTCCAAGTGATCAAGACCCTCCACATCAAACAGACACACTCAAATCTAATAGAAGAAAAACTAGGGAAACATCTGGAACCACATGGGCACTGGGAAACAAATTTCTGAACAAAAACAATGGCCTTATGCTCTAAGATCAAGAATCGACAAATGGGGATCTCATAAAACTGCAAAGCTTCTGTAAGGCAAAGGGACACTGGGTTAGACAAACGGCAACAACAGATTGGGAAAAGATCGTATTACCAATCCTACAAGCAGATAGAGGGCCTTATATCGCAAAATTTATACAAAGACTCAAGAAAGTTACGACCGCACAGGGAAACAAATAACCCTATTAAAAAATGGGGTTTCAGAGCGTACAAAGAATTCACAGCTGAGGAATGCCGAGATGGCTGAGGAAAACCTAAAGAAATGTTCAACATCTTTAGTCATAAGGGAAATGCAAATCAAAAACAACCCTGAGATTTCACCACCATCACACCAGTGCGATTGGCTAAGATCAAAAACTCAGGTGACAGCAGATGCTGGCGGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGATTGCAGACTGGGTAAATCCATTCTGGAAATCAGTTGAGAGGTTCCTCAGAAAATTGGACATTGAACTGCCTGAGGATCCAGCTATACCTCTTCTTGGCATATACCCAAAAGATGCTCAACATATAAAAGAGACACGTGCTCCACTATGTCATCGCAGCCTTATTTAATAATAGCAGAAAATGGAAAGAACCAGATGCCCTTCAACAGAGGAATGGATACAGAAAATGTGGTACATATCGTACACAATGGAATATTACTCAGCTATCAAAAACAACGAGGTTTATGAAATTCGTAGGCAAATGGTTGGAACTGGAAAATTCATCCTGAGTGAGCTAACCCAATCACAGAAAGACATACATGGTATGCACTCATTGATTAAGTGGCTATTAGCCCAAATGCTTGAATTTACCCTAGATCCCTAGAACAAACGAAACTCAAGACGGATGATCAAAATGTGGAATGCTTCCACTCCTTCTTTAAATGAGGAAAAAGAATACCCTTGGCAGGGAAGGGAGAGGCAAAGATTAAAACAGAGACTGAAGGAACACCCATTCAGAGCCTGCCCCACATGTGGCCCATACATTATACAGCCACCCAATTAGACAAGATGGATGAAGCAAAGAAGTGCAGACCGACAGGAGGCCGGGATGTAGATCGCTCCTGAGAGACACAGCCAGAATACAGAAATACAGAGGCGAATGCCAGCAGCAAACCACTGAACCTGAGAATAGTCCTCTATTGAAGGAATCAGAGAAAGAACTGGAAGAGCTTGAAGGGGCTCGAGACCCAAAAGATACAACAATGCCAAGCAACCAGAGCTTCCAGGGACTAAGCCACTACCTAAAGACTATACATGGACTGACCCTGGACTCTGACCTCATAGAGTAGCAATGAACTATCCTAGTAAGAGCACCAGTGGAAGGGGAAGCCCTGGGTCCTGCTAAGACTGAACCCCAGTGAACTAGTCTATATGGGGGGAGGGCGGCAATGGGGGGAGGGTTGGGAGGGGAACACCCATAAGGAAGGGGAGGGGGAGGGGGAGTTTGCCCGGAAACAGCGGGAAAGGAAATAACACTCGAAATGTATATAAGAAATACTCAAGTTAATAAAAAAAAAAATCATCTCAAGATTGCCAGTTGGGTAGTTATAGTCCTGGTTCCTATAGTTCATGGGTGTGGAAGTTCATGAAATAACCAAGTCTGGAGCTGACAGGTGGTGGGAGCTGGTGGGAGCTGGTGGGAGCTGAGCTTATCTTAACTTTATCTAGGTCACTTGGGACCAAACTCAAGAGGAAGGTGGGATACTAGGCATCAGGCAGGAAGAGAAGAGTTCTTATACTGAGTGCATGAGGAAAAAGAAAACCTAGCAAGAAAGGAGAGCTGGGTTATAAGCCCAACTCATTTCTGAGAGTGGAGAGTAATGTGAAGAATCTGAGACTGTTCCTGAACAAAGGAGTAAAGTTGGAAGATGGTAGAAGCACAAGGACAGTTTTCTAGGGTCAGGATTCATTGGATAAACCAGGAGAAGCAGTGAGGATTCAGTAGTCATCACAACATCTCAGTATTCAGGGGCTTCTCTACGAACAGAATCTACAGCCTCTGCAGCATGCTCTCCGGGAACATCACTTCTGCAAGGACTTGGCCATGACCCAGTCAGCCTCTGTGCCCCGCAGACGCGTGTCCATTCAGCCCTCATCTGCGTTTGTACTCGTGACTCCTACATGATCTCTGCCACGACCAGTGATAAGAAATGATTTTCCTGCTGACACTCTTCATGAGTCCAGGCATTTGTACCCCCCAAACAGATACACACCCGAGCAAACGCATTCTCCATGCACCCTTTACCTTCATTATCGGCATCACACATGAGTGTTTTTACTCCCGCTCTTATCTGCTTTTATTACCAACAGAAACGACGGCCAAGAGCTAATTTTGGTTTTATTATCCACAAATGGATGAAATGGCGTATTCAAGCATTTATCATTTCGGTGTTCACAAAGCATTTGTTCCCACATGAACAACTTTACCCCTGTATCCATCTGTAAAGTCGATGGCACTCTGTCTGCCTCTCTATAGCTGCTGCTACTGTTGAGGCTTGGAGGAGAGGTGACCTGCCCATAGGCATGACTGAGAAACATTTGGGAGAATTGTTACCATGAGGATGTGGATAGGGGGACAAGGGAGAGAATGTCAGTCACCCCAAATTAGTTGTTTTGGGGCCAAGACGGGTAGTGCACACCTTTAATCCCAGCAGAAACACTATCTCTGTGAGTTCGAGGCCAGCCTGGTCTCTGTAGCAAATTTCAGGATAGCCAGGGACACATAGTGAGATCCTGTTTCAGATATAGTCAGTCACTTTTGAAATCAGCTCATGGAATATGTGTTCACTGAGCACCTTACTGTAAAGCCAGACTCAGAAACTCTGCAGACTGAGATAGACAGGAAGTGACTCCACCTTCCAGGAGTGCAGGGGGCCAGTAGGATTCATGTGCAAGTCTCAGAGAGATGACAGCTCATAATAGAATTTTGTAACTTTTATTGTATTTAATGCCAGCCGTAGGGCAGAGTTATCTGAGTGACTGTAAGAACAGGTGACTAGATGTGAAAGGCTGGGATGCCGATAATAACGGTAAGGGGTACGTGTATGAAGGTTGGTGCGTAAAGGGAAGGGAACCTGGGACCAGTCCAGGTCTGAGCCATCTGCTTGATGGAAGAAAAGGAGCAGAGGTGAAGGGGGGGGGACTTGGACAAAAGCTGCAGTGAGAGGCTATAGAAAGACTCTGGAAAATGGCCAAAGGAAGTCAGACATGCACCCGGCAGATAAGATCTATAAACTTATTTTGCTTCCAGAATTAATTGTTGTAAATCTTTAGGAAGAAAAAAAGATGTGTCTATCTGAACTCTTTTGGTTTCCAGCTTTTACTTCTGGAAGGAAGATCTCATTCCATTTCTGAGGAAGACGTGCCTGTGCTTTTATTTTTAG
Seq C2 exon
GATCATTATGACTGGGGACTTCGTGCCATCAAGTCTGTCTTGGTTGTAGCCGGCTCCCTGAAACGAGGAGATAAAAATAGACCCGAAGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005451:ENSRNOT00000007233:43
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.056
Domain overlap (PFAM):
C1:
PF127742=AAA_6=FE(19.9=100)
A:
NA
C2:
PF127742=AAA_6=PD(10.4=77.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]