GgaINT1011503 @ galGal4
Intron Retention
Gene
ENSGALG00000007106 | DNAH17
Description
dynein, axonemal, heavy chain 17 [Source:HGNC Symbol;Acc:HGNC:2946]
Coordinates
chr18:10082411-10083211:+
Coord C1 exon
chr18:10082411-10082549
Coord A exon
chr18:10082550-10082983
Coord C2 exon
chr18:10082984-10083211
Length
434 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACG
5' ss Score
10.52
3' ss Seq
ATTTGTTGCCCGCTTGGCAGGAC
3' ss Score
6.47
Exon sequences
Seq C1 exon
ACCCTGTGCCATGGTGGTTCCGGACTTTGAGCTCATCTGTGAGATCATGCTCGTTGCAGAAGGCTTTATTGATGCCAAGCTCCTAGCAAGGAAGTTCATTACTTTGTACACACTCTGCAAGGAGCTGCTGTCCAAGCAG
Seq A exon
GTAACGGGACAATATCTGTGGTTCTTTAAGGGAAAGAGTTAACGTGAATTTCAGCCCTGACAGTTTGAGATCCCTCAGCTGGCAATGTGCTGGCTTGCAAAGTCCCGCTCTGTGGCTGAACAAATCCCACTTCAACACTCATGCAACGCATTTCTGCCTTCTGGAAGAAATCAAGAAGTTCCAAAATAGAATAGAATACAGCTGGCTAAGATGCAAGCGTGCAGATGTTCCACATCTCAGCAGAAGTGATTTACAAGCCAACAGAAATGTGCTTCCCAGGAAGCAAGGCAGACTGCCATCCATTCCTGGGCCCCAGGACAGTCTGTGGGGCGCTGTGCAGACAGCTGAGTGTGGGGAGGAGGGGAGGATATCCCTCTGTGGTTTTATTTCAAGCAGCTCTCTCACCGAAATGACATTTGTTGCCCGCTTGGCAG
Seq C2 exon
GACCACTACGACTGGGGTCTGCGGGCTATCAAGTCTGTGCTGGTGGTAGCGGGCTCCTTGAAGAGGGGCGACCCGAGCCGTGCCGAGGACCAGGTCCTCATGAGAGCCTTACGGGACTTCAACATCCCAAAGATCGTGACAGATGACCTGCCTGTGTTCATGGGGCTGATTGGGGACCTATTCCCTGCTCTGGACGTCCCCAGGAAGAGGGATCTGAGCTTTGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007106:ENSGALT00000011513:38
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=FE(19.9=100)
A:
NA
C2:
PF127742=AAA_6=PD(10.4=31.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGTTCCGGACTTTGAGCTC
R:
CTCAGATCCCTCTTCCTGGGG
Band lengths:
344-778
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]