RnoINT0048804 @ rn6
Intron Retention
Gene
ENSRNOG00000003028 | Dnah17
Description
dynein, axonemal, heavy chain 17 [Source:RGD Symbol;Acc:1563805]
Coordinates
chr10:107091241-107091760:-
Coord C1 exon
chr10:107091622-107091760
Coord A exon
chr10:107091469-107091621
Coord C2 exon
chr10:107091241-107091468
Length
153 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
3' ss Seq
CGCATTCCCACTCTCCATAGGAT
3' ss Score
10.6
Exon sequences
Seq C1 exon
GCCCTGCGCTATGGTGGTCCCCGACTTTGAGCTGATCTGTGAGATTATGCTGGTGGCTGAGGGCTTCCTGGAAGCTCGCCTCCTGGCCCGGAAGTTCATCACCCTCTACACCCTGTGCAAAGAGCTGCTCTCAAAGCAG
Seq A exon
GTGTGTTCTGCCAGTTCCAGGGGTTCTTGGCCCAGCCTCAGCGATCCACGCTTATGCCTCTGCCCTCCCTAGCCCCGAGATAAACTGAGCCTGGCGGTGCCAGATGACCACTGTTGGAGGACAAGTTCACATTCGCATTCCCACTCTCCATAG
Seq C2 exon
GATCATTATGACTGGGGCCTTCGGGCCATCAAGTCTGTGCTGGTGGTAGCTGGCTCCTTGAAGAGGGGAGACCCTACCCGGGCAGAGGACCAGGTGCTCATGAGGGCACTGCGAGACTTCAACATCCCCAAGATCGTGACTGATGACCTGCCTGTGTTCATGGGACTGATCGGTGACCTCTTCCCAGCTCTGGACGTGCCCCGAAAGCGAGACCTGAATTTTGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003028:ENSRNOT00000004035:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=FE(19.9=100)
A:
NA
C2:
PF127742=AAA_6=PD(10.4=31.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCCGACTTTGAGCTGATCT
R:
GGGGATGTTGAAGTCTCGCAG
Band lengths:
251-404
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]