BtaINT0050400 @ bosTau6
Intron Retention
Gene
ENSBTAG00000000920 | DNAH17
Description
dynein, axonemal, heavy chain 17 [Source:HGNC Symbol;Acc:HGNC:2946]
Coordinates
chr19:54318945-54319456:+
Coord C1 exon
chr19:54318945-54319112
Coord A exon
chr19:54319113-54319339
Coord C2 exon
chr19:54319340-54319456
Length
227 bp
Sequences
Splice sites
5' ss Seq
TCAGTAAGT
5' ss Score
9.14
3' ss Seq
GGGATTTAATTTGCTTCCAGAGT
3' ss Score
4.35
Exon sequences
Seq C1 exon
GATCTTTATAAAACAGCCATCGAGTTTCTGAAGCTGGAGAAGATTGAGCTCGGGGGCGTGAGGGGGAACATTCTTGGAAGCCAGGTGGCCCAGATCTACGACGAGGTCTTCGAGCTAGTGAAGGTTTTCGCCGACTGCAAATATGACCCCCTGGACCCCGGAGATTCA
Seq A exon
GTAAGTCGGGGGGCCTGAGCGGGGTCAATAACAAATGCCCCGAGGGTGGGAAGGCATGTGGAGGGGAGCGTGTGTGTCAGAGAAAAGACAGCATAAGAACTCTGCCCTCATGACAGTGAACTTGCTGAGACGTAACCTGAATCCCGGTGGGTGGGCTTAGAGTGCGCCCACTCCAAGCTTGGCACGCTGGTCAAGGTTCTAAGGTTGGGGATTTAATTTGCTTCCAG
Seq C2 exon
AGTTTTGATGACGACTACGCTGATTTTGAGACCAAAATTCAAGATCTGGATAGGAGGCTGGCCACCATCTTCTGCCAAGGGTTTGATGACTGCAATTCTATTGAGTCCAGTGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000920:ENSBTAT00000022637:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(9.4=100)
A:
NA
C2:
PF083857=DHC_N1=FE(6.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCTTTATAAAACAGCCATCGAGT
R:
TTTGCACTGGACTCAATAGAATTGC
Band lengths:
284-511
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development