HsaINT0049512 @ hg19
Intron Retention
Gene
ENSG00000187775 | DNAH17
Description
dynein, axonemal, heavy chain 17 [Source:HGNC Symbol;Acc:2946]
Coordinates
chr17:76562696-76563248:-
Coord C1 exon
chr17:76563081-76563248
Coord A exon
chr17:76562813-76563080
Coord C2 exon
chr17:76562696-76562812
Length
268 bp
Sequences
Splice sites
5' ss Seq
TCGGTAGGT
5' ss Score
9.09
3' ss Seq
ACATTTCCATTTGCTTTTAGAAT
3' ss Score
8.92
Exon sequences
Seq C1 exon
GAACTCTATAAAACAGCAATTGAGTTTCTGAAGCTGGAGAAAATCGAGCTTGGGGGCGTGCGTGGGAACCTCCTCGGGAGCCTGGTGACCCGTATCTATGATGAGGTCTTTGAGCTGGTGAAGGTTTTTGCCGACTGCAAATATGATCCCTTGGACCCTGGAGACTCG
Seq A exon
GTAGGTCCTCGGGCAGGGTTGGATGAACTGGACTCGGTGAGAACAGCACCAGCCTCGGTACCAGCTTAGGGGTGTGATGGGAGGGCACACGGAGGAAGCAGGTGCCAGGTGATCCCAACACTTTGAAAACTGTGTAGAGCGGTCCCCGCAACAGCACATTCAGCTGCGCCTCAGTCCCGAGTCCTCTCAGCAGGGCAGGGGCTGGAGAGGGTGCCCTTGGCTTGCTTTGCACGCTGATTACAAGGTTGACATTTCCATTTGCTTTTAG
Seq C2 exon
AATTTTGACCGTGATTATGCTGATTTTGAGATCAAAATCCAAGACCTGGATAGGAGGCTGGCCACGATCTTTTGCCAAGGATTTGATGACTGCAGCTGTATCAAGTCCTCCGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187775-DNAH17:NM_173628:10
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(9.4=100)
A:
NA
C2:
PF083857=DHC_N1=FE(6.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAAAACAGCAATTGAGTTTCTGAAGC
R:
TTTGCGGAGGACTTGATACAGC
Band lengths:
276-544
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)