GgaINT1011547 @ galGal4
Intron Retention
Gene
ENSGALG00000007106 | DNAH17
Description
dynein, axonemal, heavy chain 17 [Source:HGNC Symbol;Acc:HGNC:2946]
Coordinates
chr18:10073701-10074167:+
Coord C1 exon
chr18:10073701-10073871
Coord A exon
chr18:10073872-10074050
Coord C2 exon
chr18:10074051-10074167
Length
179 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
3' ss Seq
CACCGCCTTGTCATTGGCAGCAA
3' ss Score
6.17
Exon sequences
Seq C1 exon
CAGGAGCTGTATGAGACGGCCATGGAGTTCCTGAAGCTGGAGAAAGCAGAGCTGGGCGGGGTGAGGGGGAACATCCTGGGGCACCAGGTGCTGCAGGTGTATGAAGAGGTCTCTGAGCTCACCAAGGAATTCGCTGATTGCAAATACGATCCCTTGGATCCCGAGGACGAG
Seq A exon
GTGAGCGGCTGCTGGGATGGAAGGTTTGCATCGCCTCTCGCTGGAAGGCTGCACATAAAATCATCACCGCAGCCACCCTTGTGCTGGCGCTGGGGACAACCGCGGGCTCTGGGGCTGAATGAACCCTCCTGGAGCTGCTGGTGCTGAGCCTGCTCTGAGCACCGCCTTGTCATTGGCAG
Seq C2 exon
CAATTGAACCAGGATTTCACAGAGTTCCAGAGCAAGATTCGGGACCTGGACAGGCGGATGGCCACCATCCTGTGCCAGGGCTTTGGTGACTGCAACAGCCTGGGGGCGGCCGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007106:ENSGALT00000011513:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(9.5=100)
A:
NA
C2:
PF083857=DHC_N1=FE(6.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCATGGAGTTCCTGAAGCTG
R:
AGGCTGTTGCAGTCACCAAAG
Band lengths:
254-433
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]