BtaINT0050405 @ bosTau6
Intron Retention
Gene
ENSBTAG00000008605 | DNAH2
Description
dynein, axonemal, heavy chain 2 [Source:HGNC Symbol;Acc:HGNC:2948]
Coordinates
chr19:28065841-28066492:+
Coord C1 exon
chr19:28065841-28065997
Coord A exon
chr19:28065998-28066252
Coord C2 exon
chr19:28066253-28066492
Length
255 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGC
5' ss Score
10.08
3' ss Seq
TGGGTGTGGTCTGACTCCAGGTG
3' ss Score
7.25
Exon sequences
Seq C1 exon
GATCATTGCCATGCTGTCCCCAGATGAGCAGGCCCTGTTCAAAGAACGTATCCGGTTCCTGGATAAGAAGATCCACCCTGGGCTCAAGAAGCTGCACTGGGCCTTGAAGGGGGCCAGTGCTTTTTTCATCACAGAGTGCCGCATACATGCCAGCAAG
Seq A exon
GTAGGCTGTGGTCATTAGACCCTAAAGGTCTGCAAGGCTGACTGAAAAGCTGACATGTGGGTCCTTAATACCCCAGTCTCAGGTAGTGGCAGAGAGACCAAGGGAATTGTGTGAAAGAAATGAAGTGTGTTTAGTGAAGGACTTTTCTTTTTTTTTTTAATTGTCAGTAACTCTAGCTAGAGAATAGACGGAAGGATGGAATTAGGCCCAGAGGATCTGTTCCCAAACTCCCCCATGGGTGTGGTCTGACTCCAG
Seq C2 exon
GTGCAGACGATCGTGAATGAGTTCAAGGCGTCCACTCTGACCATCGGCTGGCGAGCCCAAGAGATATCAGAGACACTGCTGGTGCGCATCAGCGGCAAACGGGTGTACAGGGACCTGGAATTTGAGGAGGACCAAAGAGAGCATAGGGCAGCCATGCAACAGAAATTGATGAGCCTGCATCAGGATGTGGTGGCCATCATGACCAACTCCTATGAAGTCTTCAAGAATGACGGCCCCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008605:ENSBTAT00000006277:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.013
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=PD(12.7=79.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAAGAAGATCCACCCTGGGCT
R:
GATGGCCACCACATCCTGATG
Band lengths:
292-547
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development