HsaINT0049594 @ hg19
Intron Retention
Gene
ENSG00000183914 | DNAH2
Description
dynein, axonemal, heavy chain 2 [Source:HGNC Symbol;Acc:2948]
Coordinates
chr17:7661813-7662442:+
Coord C1 exon
chr17:7661813-7661969
Coord A exon
chr17:7661970-7662202
Coord C2 exon
chr17:7662203-7662442
Length
233 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGC
5' ss Score
7.93
3' ss Seq
ATGACGGGGCCTGACTCTAGGTG
3' ss Score
5.16
Exon sequences
Seq C1 exon
GATTATTGCCATGCTGTCCCCAGATGAGCAGGCCCTATTCAAAGAGCGTATTCGGCTCCTGGATAAGAAGATCCACCCGGGACTCAAGAAACTGCACTGGGCCTTGAAGGGGGCCAGTGCCTTCTTCATCACGGAGTGCCGTATACATGCCAGCAAG
Seq A exon
GTGGGCCATGGTCCTTAGACCCTAAAGGTCTGCAAGGCTGATGGGTCATTTATACCTGAGTGTTGCATAGAGATTGGGAAACCTGGGGGTAGTGTAAAAAGAATTAAGTTTGCTTGGGGAAGGACTTTTTTGTGTGTCATCCAGTCTAGCTGGAGAACAAGTGGGAGGGTAGAATGAGGTCCAGATGGTCTCTTCCCGAGCTGAAACTCCCCCATGACGGGGCCTGACTCTAG
Seq C2 exon
GTGCAGATGATTGTGAATGAGTTCAAGGCATCCACTCTGACCATTGGCTGGCGAGCCCAAGAGATGTCAGAGAAGCTGCTGGTACGCATTAGTGGCAAACGGGTATACAGGGACCTGGAATTTGAAGAGGACCAAAGAGAGCATCGGGCAGCTGTACAGCAGAAATTGATGAACCTGCACCAGGATGTGGTGACCATCATGACCAACTCCTATGAGGTCTTCAAGAATGATGGTCCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000183914-DNAH2:NM_020877:13
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.013
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=PD(12.7=79.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTATTGCCATGCTGTCCCCAG
R:
CCGATGCTCTCTTTGGTCCTC
Band lengths:
302-535
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)