BtaINT0050441 @ bosTau6
Intron Retention
Gene
ENSBTAG00000008605 | DNAH2
Description
dynein, axonemal, heavy chain 2 [Source:HGNC Symbol;Acc:HGNC:2948]
Coordinates
chr19:28097747-28098322:+
Coord C1 exon
chr19:28097747-28097945
Coord A exon
chr19:28097946-28098097
Coord C2 exon
chr19:28098098-28098322
Length
152 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
3' ss Seq
TTCTATACCTTTCCCACCAGACC
3' ss Score
8.7
Exon sequences
Seq C1 exon
CTCCCCCTTCTATAAGATCGTGGTGCCCACCGTCGACACTGTCCGCTACAACTACCTGGTGAGCACCATGGTGGCCAGCCAGAACCCCGTCCTGCTGGTGGGTCCTGTGGGGACTGGAAAGACCTCCATTGCCCAGAGTGTCCTGCAGTCCTTGCCCTCCAGCCAGTGGTCAGTGCTCACAGTCAACATGTCTGCGCAG
Seq A exon
GTGTGTGGCAGGACCCACGGGCCAGGTCGCCAGCCCCTGCTCTCTCCCTGTCTCTGCTTCCCTTTGGGAGCCCAGTGCCCGCTGGACATGCCTCTCTAACCTCAGATTTCTCTCTTGGGACCCAAGCGTTCATTCTATACCTTTCCCACCAG
Seq C2 exon
ACCACGTCTAATAATGTGCAGAGCATCATTGAGAGCAGGGTGGAGAAGCGAACCAAGGGTGTCTATGTGCCTTTCGGAGGCAAAAGCATGATCACCTTCATGGATGACCTCAATATGCCAGCCAAGGACACGTTTGGGTCCCAGCCCCCGCTGGAGCTGATTCGCCTCTGGATTGACTATGGCTTCTGGTATGATCGAACGAAGCAGACCATCAAGTACATTCGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008605:ENSBTAT00000006277:46
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.040
Domain overlap (PFAM):
C1:
PF127752=AAA_7=FE(24.4=100)
A:
NA
C2:
PF127752=AAA_7=FE(27.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAGTGTCCTGCAGTCCTTG
R:
GCCATAGTCAATCCAGAGGCG
Band lengths:
249-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development