HsaINT0049630 @ hg19
Intron Retention
Gene
ENSG00000183914 | DNAH2
Description
dynein, axonemal, heavy chain 2 [Source:HGNC Symbol;Acc:2948]
Coordinates
chr17:7695975-7696523:+
Coord C1 exon
chr17:7695975-7696173
Coord A exon
chr17:7696174-7696298
Coord C2 exon
chr17:7696299-7696523
Length
125 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
3' ss Seq
ATTCGGTACCTTTTCACCAGACC
3' ss Score
6.39
Exon sequences
Seq C1 exon
CGCCCCCTTCTATAAGATCATGGTGCCCACCGTCGACACTGTTCGCTACAACTACCTGGTGAGCAGCTTGGTGGCCAACCAGAATCCCATTCTGCTGGTGGGTCCCGTGGGGACTGGGAAGACCTCCATCGCCCAGAGCGTTCTGCAGTCCCTGCCCTCCAGCCAGTGGTCGGTGCTCGTTGTCAACATGTCCGCACAG
Seq A exon
GTGTGTCGGGGATCCAGGGGCCAGGCTGCCGGCTCCCTTGGGATCCAAGTGCCTGCCTGACCCTCCTCTCTAAGCCCGTATTTCTCTCAGGGGACCCACACATTCATTCGGTACCTTTTCACCAG
Seq C2 exon
ACCACATCCAATAACGTGCAGAGCATCATTGAGAGCAGGGTTGAGAAGCGAACCAAGGGTGTCTACGTGCCATTCGGGGGCAAAAGCATGATCACCTTTATGGATGACCTAAATATGCCCGCTAAGGACATGTTTGGGTCCCAGCCACCCCTGGAGCTGATCCGCCTCTGGATTGACTATGGCTTCTGGTATGACCGTACGAAGCAGACCATCAAGTACATTCGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000183914-DNAH2:NM_020877:46
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.040
Domain overlap (PFAM):
C1:
PF127752=AAA_7=FE(24.4=100)
A:
NA
C2:
PF127752=AAA_7=FE(27.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCTACAACTACCTGGTGAGC
R:
ATCATGCTTTTGCCCCCGAAT
Band lengths:
248-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)